Pseudomonas sp. 21, UB43_RS11325
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 21 contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCCCGCTGATCGACGATGTGCTGGCGATCGCCAAGCGCCCGGTGATCGTTTCCCACACCGGCGTCGCCGGCACCTGCCCCGGCCCGCGCAACCTGAC CGACGCCCACCTGCGCGGCATCGCCAACACCGGCGGGGTGATCGGCATCGGCTACTGGGACGGCGCGGTCTGCGAGACGTCGGTGGAGGCCATCGTCAAG GCCATGCGCTACGCCGCCGACAAGGTGGGCGTCGAGCACGTCGCGCTGGGCTCTGATTTTGACGGCGCGGTGAATGCGCCCTTCGACACCACCGGCCTGG CACAGCTGACCCAGGGCCTGGCGAAGGCCGGTTTCAGCAACCAGGACATCGCCGCGATCATGGGCGGCAACGTGCGCCGGCTGCTGCTGGAGAGCCTTCC GTAGCCCAAGTCAATAGGCAGAATGCCCGTGGCACTTCGCCCTGCGGGCATCTTGCATTACACTGGCGGCCGTTCATTCCTTAACCAACACGAGACAGCC
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| DNA Sequence for Gene |
>UB43_RS11325
GTGCTTAAAGCACTCAAGAAAATCTTCAGCAAGGGCGACGGCGAGCAACCCGTGGCCACGCCAGCGGCCCCCGCTCCCGCCGCAGAAAAGCCCGCCCAGA GCGGTGAACGACGTCCGCGCAAACCGCGCACCCCGCGCCCGGAAGGCGAATCCGCCGAGAAACCGGCCCGCGGCCCGAAGAGCGACAAACCCCGCGCCGA GCGTTCCGACAAAGCCGAACGCGGCGAAAAACGCGAACAGGCCGCCAAGGCCGACTCCACCACCGACAAGCCCCGCGAGCCCAGGGCTGACAAGCCGCGC CGCGAACGCAAGCCGCGCCCGCCGGTGGTGGACAACTGGAAGCTGGAAGACTTCGTGGTGGAGCCGGCCGAAGGCAAGACGCGTTTCCACGACTTCAACC TCGACCCGCGCCTGATGCACGCCATCCATGACCTGGGCTTCCCCTACTGCACGCCGATCCAGGCGCAGGTACTGGGCTTCACCCTGCGTGGCCAGGACGC CATCGGCCGCGCCCAGACCGGCACCGGCAAGACCGCGGCGTTCCTCATCTCGATCATCACCCAGCTGCTGCAGACCCCGCCGCCGAAAGAGCGCTACATG GGCGAGCCGCGTGCGCTGATCATCGCGCCGACCCGCGAGCTGGTGGTGCAGATCGCCAACGATGCCATCGGCCTGGCCAAGTACACCGGCCTGAACGTCA TGAGCTTCGTCGGCGGCATGGACTTCGACAAGCAGCTCAAGACCCTGGAATCGCGCTTCTGCGACATTCTCGTGGCCACCCCCGGTCGCCTGCTGGACTT CAACCAGCGCGGCGAGGTGCACCTGGACATGGTCGAGGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCCGCAGGTCCGCCAG ATCATCCGCCAGACCCCGTACAAGGGCGAGCGCCAGACCCTGCTGTTCTCCGCCACCTTCACCGACGACGTGATGAACCTGGCCAAGCAGTGGACCGTCG ATCCGGCCATCGTCGAGATCGAGCCGGAAAACGTCGCCAGCGATACCGTCGAACAGCATGTCTACGCCGTTGCCGGCAGCGACAAGTACAAGCTGCTGTA CAACCTGATCGCGCAGAACGACTGGACCCGCGTGATGGTCTTCGCCAACCGCAAGGACGAAGTGCGGCGCATCGAGGAACGCCTGACCAAGGACGGCATC AGCGCCGCCCAGATGTCCGGCGACGTGCCGCAGCACAAGCGCATCAAGGTCCTGGAAGGCTTCCGTGAAGGCAAGATCCGCGTCCTGGTCGCCACCGACG TCGCCGGCCGCGGCATCCACGTCGACGGCATCAGCCACGTGATCAACTTCACCCTGCCCGAAGACCCGGACGACTACGTGCACCGCATCGGCCGTACCGG CCGCGCCGGCAGCACCGGTACCTCCATCAGCTTCGCTGGCGAGGACGATGCCTTCGCCCTGCCGCCGATCGAGGAACTGCTGGGCCGCAAGATCAACTGC GAGATGCCGCCCACCGAGCTGCTCAAGCCGGTACCGCGCAAGCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCCGCTGCACCAGCTTTCTGCTCCAAAACAAGGCGAAGCCACCCGGCTTCGCCTTTTTTGTTTCCATCGGCGTTACGTCCGGTGACGCCTCCTCCTC TCCCCCGCTGAAACCTACGCCGGTCCCCGCGCCAGAGCCTCGCGTTTTTCCCGCCGGACCCGCTGGGACGACCGTGCGGAATTCCCCGCAAACAATGGCA CCGCGCCATCCCTGTCACGAAATCAGCCCCGCCCCGGCCATTTCTGCTCAGTTTTATTTACAGACGTAAAAAAATTCGCACGCTTCTTGCAAAGCACGCG AGAACAATTCCAAGAACTCGTCGGAATCCTCCCATGCCCTTGCGCGCCAAACTTGCTCTGAGTTTCCTCTCGGTCGGCCTGATCCCCGTGCTGGTGATGG CCATCGTGGTCTATCTCCAGGCCAGCCGTGCCCTCGAAGAACAAAGCCTGAACGCCCTGGAGGCGGTCGCCAGCATCAAGCAGCGGCAACTGATGGACGC
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| Amino Acid Sequence |
>RNA helicase
MLKALKKIFSKGDGEQPVATPAAPAPAAEKPAQSGERRPRKPRTPRPEGESAEKPARGPKSDKPRAERSDKAERGEKREQAAKADSTTDKPREPRADKPR RERKPRPPVVDNWKLEDFVVEPAEGKTRFHDFNLDPRLMHAIHDLGFPYCTPIQAQVLGFTLRGQDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYM GEPRALIIAPTRELVVQIANDAIGLAKYTGLNVMSFVGGMDFDKQLKTLESRFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQ IIRQTPYKGERQTLLFSATFTDDVMNLAKQWTVDPAIVEIEPENVASDTVEQHVYAVAGSDKYKLLYNLIAQNDWTRVMVFANRKDEVRRIEERLTKDGI SAAQMSGDVPQHKRIKVLEGFREGKIRVLVATDVAGRGIHVDGISHVINFTLPEDPDDYVHRIGRTGRAGSTGTSISFAGEDDAFALPPIEELLGRKINC EMPPTELLKPVPRKH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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