Pseudomonas sp. 21, UB43_RS05635

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GAAAGCCTGTTGTTCGATCCCTGGGATGGCCAGTCCGCGTGGCAGGAACGGCCGCTGGAATCCCGCCTGTATGGCACGCGCAATGCCGGGGAGCGGGTGC CCCAGGCGATACATCGCCTGCTGGATACCCGCGCACCGGGCACGCGTGATCTTGCCAACGTCTACCTGCAATGCCTGTTGCTGGGCTTCCACGGCAAGCT GCGCGGTCCGAAGGGCGAGGCGCTCCATGAGAAGTGGCGGCACGCGCTGTTCGCCCATGCCTGGCAGCGTGACGCCGAGGTGCCGGCGTTGCTCGAGACC CTGGCGCGCCCGGCCGCTGCAGTACCTCTGCGACTGCCGCTGCGGCGTGCGCTGCCCGACGGCTTGCGCCTGATGCTGATGGTTGTCGCCGGCGTCTTCC TGCTCATCGTCCTCGGCCATTGGCTGTGGAGCGACGTGCGCGGTGAACTGGCGCCCTTGCTCGACCTGGCTTGTGCGGCCGCCTTCCCGGAGCGGGTGGT
DNA Sequence for Gene
>UB43_RS05635
TTGAGCGGCTGGCTGGTGCTGGCCCTGCTGTTGCTGCTGGTGGTGGCGCTGGCAGTCGCGGGGTTCCTCTGGCTGCGCAGCAAGGGGGGCGAAGCGGTAC GCACCTTCTACCTGACCGTGCGGCAGATGGAGCAGGACCATGATGTCGCCGACCGCTACGACGTGCCCTGGTATCTCCTGCTGGGCGACCCGCTGCTGGG CGAGCGCCTGGCCGCGGACTGGAGCCTGGCTCCGGTGAACCGCCCGGCCTGGTTCGGTCGCTGGTGGGCCGATCAGGACGGCGCCTTGCTGGCGGTACCG CAGACCCTGTTCATGCCGGAAGAGAGCGCACCGTCGTCGCTGCAGCCCTGGCGGCGGCTGCTCGGCCTGCTGCTGCGGATGCGTCCGCGCCGTCCGCTGG ACGGCGTGATCTGGGCGGTGCCGGCGGAGCGTCTGCTGGACCCGGCCAGCCTTGCCCAGGAGAGCATCCAGCTACGTCGGCGCTTCAACGACCTGTTGCA GCGGCTGGGGCTGAGCCTGCCGGTCTACGTGGTGGTGACCGGGCTGGAAGCGCTCGATGGTTTCGCCGAACTTCGCGCGGCGCTGCCGGCCGAGGTTCGC GAGCGGCCTCTGGGCTGGGCCTCGCCCTTGCAAGTGGATGCGGCCTGGCAGGGCGAGCACCTGGAGCGCGGCTTCGATCAGGTATTGCAGGCGCTGCAGG CGGCGATCCTCGAAGCGGGAGTGCTCAAGGGGCAATTGAGCGAGGCGCTGTATCGCTTCCCGCAGGCGCTGGAGGGCCTGCGCGAAGGTCTGCGCCAGCG CCTGGAACCGGTCTTCCAGGGAAATGCGCTGGGTGAGGCGCCACGCTTGCGCGGCCTGTACTTCAGTGGCGCGTACCGCATGGCTCCCAGTGCTGACGAC TGGGCGCTCTCGGCGCGGGAGGAGGCACCCGCGCAATTGCTGTTCAGCCAACATCTCTGGCAATCGCGCCTGCTCGCCGAGCGCGGACTGGCCCAGGCTG TGCCGCGAGTCCTGCGCCTGCGCCAGCGTTCGCAGCGCGTGCTGGGGGCGGTGGCTGGCGTGGTCGGCGTCTGCTGGCTATTGGGGATGCTCTGGGTCTG GCACGTGGATTCCCGCGAGGCGCAGGCGCTGGGGCAGCGCATCCTGTCCATGCAGCGCGGGCAGGTCGAAGGCGAGGCGGTCGGCGCCTCGGCGGAGGAG GCCGCCCGGCAACGCCTGCAGGCCTACTGGGCGCTGCTGCAGGCCGCGCCGCGCTGGCACTTCAGCTCACTGGTGTATCCGAGCTCCTGGTTCTCCGGTT TCGACGAGCACATGGATGAACTGCTGCGAGACCTGACCCGCCGCGAAGTGCTTGTGCCCCTGCAGCAGGCGCAGGCCGCCGAGCTGGTCCGGCTGCGCGC CATCCGCAGTAGCGAACGCCGCGCCAACGTGCAGAGCGACAGCCCCGAGCAGTGGCCGAACTTCGTTGCCGCTCGCGACCTGGCCCACAGCGTGCTGGCC TTCGAGCAGCGCAACCGCTGGTACACCGAGCTGCGCGCCGGCACTTCGAAGAACGCTCTGGAAAGCCTCGGCAAACTGGGCGAACAGGCTTACGGCCTGA CGCTCGAACCAGCCTCCCTGCGTAACGCCGGCTACCTGCAGTCGGTGCTCGGCCAGGGCATCCCCGATGCTCCGGCGCCAGTCGACCCCGGCCCGCGCGA GGGCCAGTTGGCGCGCAACTTCGACGATCTGATGAGCCTCTGGCTCGACCAGTTCTTCCTCGCCGACAACTTCGTGCGCCCGGCCGGCTTCCTGCGTCTG CACCTGAACGAACTCAAGGCGCGGCAGGGCAACAGCCTCGAAGAGCTGGAAGAGACCGCCGCGCAGATCGACGCACTGCGCAACATGGTGGCCCTGACCA ACGCGGCCTGGAGCCACGGCAATGCCCAGGAGATCGTGCCGGGCTTTCGCGCGATGCTCGACGACGTACGCCAGTCCTACCTGCTCGGCCCCTCGGCGGA GGCGCGGGTAACCAGCCAGGCCAGCAAGCTGCAGCGCGCCTTCCACGACCAGTGGATCTCCGCCGCCGGTTCCCGCGACAACCTGCTGCAACTGCAGCCC GGTGGCACGCTGGCGCTGCAGGAGCATGTGGTGGCGCTGGGCAGCACCATCGAATCGCTGTTGCGCCAGGACTTCGCCGGCACCGCCCTGAGCAAGGGCG CGCAGGACATCGATCCGCGCGGGCTGGGCAATCTCGATGCCCACTCGCTGAACGCTGCCCTGGCGTACTACGCCAGCTACCGCAAGTACAGCGAGCAGGA GCAGGCGCGGATTCCGGCCGAGTACCGTGACGCCCTTGCCGAGAGTGCCGCCGCCGCTGCCGCCAGCGCTATGTGGAGCAGCCTGACGCAATCCGTTCTG GCCAGTGGCGCGCCCGTGAAGAACACGTTCGACGTTCCTCTGGAGCAAGCCGAGCAGGTTCGTTCGGCCCTGGAATCCGTGCAGCGGAGCGATCTGGCGA ACGCACTGGACAGCCACCTGACCCGTGGTGCGCTGGCCGACGTCGACGGCGTGTTGAAGTCGATCGATGCGTTGCCACTGTTCCGCGTTCGCTCGGAGCC ATCCGGTTGGGATGGCACGCGCAACTTCGGCCTGCAGCTGTACCGCTCCACCGACACCCAGGACCTCAAGCGCAACCTCGCCCAGCAGTTCGAGACCATG CTCGCCCTGAGCGAAGAGCACGAGCCGGCGCTGACCTGGCTGCGTGACCGGGGCAACCTCGGCTTCTCCGACCAGGACAAGGTGCGGCGCTTCACCGACC TCAGCGATGAGCTGGTCAAGTACAAGGCGCAGAACCCGACCAGCTCGCCGATGTTGCTCGACCAGCTGGTGACCCGCGACTTCGTGGAAATGGACGCCGC CAGCTGCGGCAACATCCTGCGTACCTCCGCGCTGGCGGCCGGACAGGGCGACGTGGCGCGCTTCACCCGTGGTCTGCACGGCCAGGCGCAGCAACGCTGC CTGGAGCTGCAGCAGAAGGATGCCGCCCAGGCCTGGGCGGCCATCGCGGACTACTTCAACCAGTACCTGGCCAATCGCTTCCCCTTCGCCTACAGCCTGC AGGCCGAGGACGCCGACCCGGCGCGGGTGCAGCACCTGGTCGAGTTGCTCGACCAGAACCTGGAGCGGGCCCAGGCCGGCCTCAAGCTCAGCCAGTCGGT CGACCGCGTGGCGGCCGCGGATTTCCTCCAGCGCCTGCAGTTGGCCAAGGCCTGGATGGGCCCCCTGTTCCAGCGCGACAAGGGCGGGGCGCAAGGCGTC GACCTCGACGTGCGCTGGCGTACCGACCGCGAGGCCGAGCGTGGTGCCGACCAGGTGATCGCCTGGACGCTCTACGCGGCGGACCGCCCGCTGAGCTTCC CCGGCAGCGATAGCCAGCGCCTGCACTGGAATGTCGGCGAGCCGATGAAGCTGTTGCTGCGCTGGGCCAAGGACAGCCCGCAACGGCCGGATATCGACCC GCAGCAGGCAAGCATGGCCGTGGCGGACCTGGAAGTGGGCTGGGAGTACGGCGGCCCCTGGGCGCTGATGCGCCTGCTGCGTTCGCACCTGATCCTGCAG CGCCAGCCCAGCGCCGACTACACCGACTTCCCGCTCGCGTTGCAGGTGCCGGTCCGTGCGCCGAACAGTCGCGAGCCCGAGGCGCGGATGTTCCTGCGCG TGTCCCTGATGACCCAGGACGCCAAGCAGCCGCTGTCCGTCCAGCCCTTGCCCGTACGCGCGCCGCGCACGCCCTTCAGCGGGGTCGGCGTGGCGTCCTT TGCCGGCGCCCAGGAGTTGCCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TTTCAGACGAGGCGCTGCAAGCGCTCCTGCAACCGCTGTCGGGCGAGTCGCCCTGCGGGGAGTCGCTGCGCCATGACCCGCTGATGGACCGCCTGCGCGA GCTGCGTCGCGAGGAGGATACCGAGCTGCCGGCCGGTGTCTGGCAGGCCGAGCCCAAGCGCGCGGACTGGTTGGCGCTGGCGGAGCTCGCCGAGGAGTTG CTGGCGCGGCGCAGCAAGGACCTGACCATCGCCGGTTTTCTGGGCGAGGCCTGGATAGTCACCCACGGCCCTGCGGGCCTCGCCGCCGCACTGGGCCTGC TGGCCGGTCTTTGCGATGCGTTCCCTGAACAGCTGCACCCGCAGGCCACCGACGGTGACCAGGAGTGGCGTGCGGCGCCGCTCGCCTGGTTGGCGCGGCG CTACACCGAACTCCTGCTCACCCGCGTGCCGCTGTGCAGCGGCTGGCCGAAGACCACCCTGCATGGCTGGCAGGAACTGCAGCGACGACAGGTGCAGGCC
Amino Acid Sequence
>type VI secretion system protein ImpL
MSGWLVLALLLLLVVALAVAGFLWLRSKGGEAVRTFYLTVRQMEQDHDVADRYDVPWYLLLGDPLLGERLAADWSLAPVNRPAWFGRWWADQDGALLAVP QTLFMPEESAPSSLQPWRRLLGLLLRMRPRRPLDGVIWAVPAERLLDPASLAQESIQLRRRFNDLLQRLGLSLPVYVVVTGLEALDGFAELRAALPAEVR ERPLGWASPLQVDAAWQGEHLERGFDQVLQALQAAILEAGVLKGQLSEALYRFPQALEGLREGLRQRLEPVFQGNALGEAPRLRGLYFSGAYRMAPSADD WALSAREEAPAQLLFSQHLWQSRLLAERGLAQAVPRVLRLRQRSQRVLGAVAGVVGVCWLLGMLWVWHVDSREAQALGQRILSMQRGQVEGEAVGASAEE AARQRLQAYWALLQAAPRWHFSSLVYPSSWFSGFDEHMDELLRDLTRREVLVPLQQAQAAELVRLRAIRSSERRANVQSDSPEQWPNFVAARDLAHSVLA FEQRNRWYTELRAGTSKNALESLGKLGEQAYGLTLEPASLRNAGYLQSVLGQGIPDAPAPVDPGPREGQLARNFDDLMSLWLDQFFLADNFVRPAGFLRL HLNELKARQGNSLEELEETAAQIDALRNMVALTNAAWSHGNAQEIVPGFRAMLDDVRQSYLLGPSAEARVTSQASKLQRAFHDQWISAAGSRDNLLQLQP GGTLALQEHVVALGSTIESLLRQDFAGTALSKGAQDIDPRGLGNLDAHSLNAALAYYASYRKYSEQEQARIPAEYRDALAESAAAAAASAMWSSLTQSVL ASGAPVKNTFDVPLEQAEQVRSALESVQRSDLANALDSHLTRGALADVDGVLKSIDALPLFRVRSEPSGWDGTRNFGLQLYRSTDTQDLKRNLAQQFETM LALSEEHEPALTWLRDRGNLGFSDQDKVRRFTDLSDELVKYKAQNPTSSPMLLDQLVTRDFVEMDAASCGNILRTSALAAGQGDVARFTRGLHGQAQQRC LELQQKDAAQAWAAIADYFNQYLANRFPFAYSLQAEDADPARVQHLVELLDQNLERAQAGLKLSQSVDRVAAADFLQRLQLAKAWMGPLFQRDKGGAQGV DLDVRWRTDREAERGADQVIAWTLYAADRPLSFPGSDSQRLHWNVGEPMKLLLRWAKDSPQRPDIDPQQASMAVADLEVGWEYGGPWALMRLLRSHLILQ RQPSADYTDFPLALQVPVRAPNSREPEARMFLRVSLMTQDAKQPLSVQPLPVRAPRTPFSGVGVASFAGAQELP
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site