Pseudomonas sp. 21, UB43_RS05625

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AAAGCCTGCCTCTGTGCTGTGCTCCTGGCAGTTCTCGGAGGCTGTTCCTGGTTCGGTCCGAAGGTCGATGTCGACCGTCTGACCCTCGACGTCGCGAGCA AGGCCAACGGCGATTCGCCCATCGCCGTGGACTTTGTCGCGGTGCAGGATGCGGACCTGCTCAAGCTGCTCTCGGCGATGAGCGCCAAGCAGTGGTTCAG TGACCGCGAACAGTACCGCCGCGACTACCAGAAGCAGCTCTCCGTGTGGAGCCTAGAACTGGTGCCCGGGCAGTTCATGGAGGCCAGGGACTTCCCCCTG GCCGGCAAGCCGGCTTCTGGACTTTTGGTCTTTGCCGGCTATAACACTCCCGGCGCCCATCGCATGCGCCTGGATCAGCAGCCCAACCTGTGGCTGCGTT TCGACAGCAGGGAGATGCGCCTGCTGAGTGCCGAGGAGCACTGAACCACCGCCTTGCCAGGCGGGCCCATGACAATCCAGGACGTCGAAGGGGGAGTGGT
DNA Sequence for Gene
>UB43_RS05625
GTGAGAGTTCTGCCTGACGCAGTTTGTTGGCACGAAGGGATGCAACTGCTTCCCCAGCACTTCCAGCTCCAGGGCCTGCGCGCCGAAGTGCTGTCCGCGC GCCTGGCCCATGCGGCCAACCCCTGGTTCTGGGGGCTCGAACACCTGGAGCTGGACCCTTCCGCCCTGAGTACCGGCGTGGTGCGTATTCTCGCGCTGGA GGCGATCCTGCCCGACGGCCTGCCGGTCAGCCTGGGCCAGGGCGGCACGCTGGTGTTCGACGCCACGGCCGCCATCGCCGCGGCCGCCGACGCCAGCATC ACCCTCTACCTCGCACTCAGCCCACTCGCCCGTGGCGGCCAGGTGCTGCCGCTCAAGGGCCGTCTGCAATCCTTGAGCGGGCCGGCCGTGCCGGACCTGG CCAGTGGCGAGAATCCCGAACCCGTCGTCGTCTGGCGCCCGGCCCTGCGCCTGGTGACCGAAGCGCAGCGCGCCGACTCGGTGTGCCTGCCGCTGCTGCG TGTCGGCAAGGACGCCGGTGGTTTCGTCGGCCTGCCTTACGTGGCGCCGACTCCGCGAATCGCACCGGCGTCGATGCTGGGGCAGGCGCTGGTGGCGCTG TGTGCCCATGCGCGGGAGAAATGCGTGTTTCTCGCCGGCCGCCTGCGCCAGGCGCAGCAGGCGGAGAACACCGAGGACAGCCAGGAAATCCGCCGCCAGC TGGCGGCGCTGTGGGCACGCCTGCCGGAACTGGAGGCCGCGCTCTACAGCGGCACAGCCAGCCCGGCACAGCTGCATGGCCTGCTGTGCGGAATGGCCGG CAGCTGGAGCGTGCTCGATCCGCTGGGCGGCGTCCCGGCCTTCCCGACCTTCGATTTCAACGAACTGCTGCGGACCTTCAACCCGGTGATCGAGTGGCTG GAAGTCACCCTCGGGCGCGTGCGCGCGGGCTACCGCAGCCTGGCTTTCGAACGGCTGGGCAACGACTTCGCGCTGGCCCTGCCGGACCTGCGTTCGCCGG TCCAGCGTCTGGTCATCGGCCTGCGCATGCCGCCCGGCTGCGGCGAGGAGCAGGCCCACGAGTGGCTGTCACGCTGCATCGTCGCCTCCGAATCCAGCCT GGCGATACTGGGGCGGCAGCGCATGTCCGGCCTGGAGCATCTGCCCATGAGCCGCGCCGAACAGATCGCCTACAGCGTGGGGGAAGACACCCACCTGTTC GTCGTGCAGGCGGAGGGCGACTGGTTCGATCCCGCCCAGCGCCTGTGCCTGCGGGCCGCTTCGGCGGGCAGCAGTGGCGGTGGCAGTCCCTGGCAGGTCG TGCTGTTCATCGTGGACGGCGCCAGCAGCGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGCAGGGAAGCGAAGATGCTTGAAGGGAATCAGGCGATCTATCCGCCGTCGTTCGGCGAGGCCCCTCTCAGTGGCGCCTTCCAGGCCGCCTGGCTGGAGT GGCGCAGGCGCTGGGAAGAGCTGCGCGAATCCACCGGCGAGGACAGTGCGACGCTGGAGCGGGTCGCCGACGAAGCCCAGGCGGTGGTGCGTCGCCTGTG GCGCAGCGCCAATGCCAGCGTCGGCGATGCCGCCGGCGAGCAGGTGAAAGGCATGGTTTACGCCTTCGTCGCGCTGCTCGACGAAAGCCTGTTGTTCGAT CCCTGGGATGGCCAGTCCGCGTGGCAGGAACGGCCGCTGGAATCCCGCCTGTATGGCACGCGCAATGCCGGGGAGCGGGTGCCCCAGGCGATACATCGCC TGCTGGATACCCGCGCACCGGGCACGCGTGATCTTGCCAACGTCTACCTGCAATGCCTGTTGCTGGGCTTCCACGGCAAGCTGCGCGGTCCGAAGGGCGA
Amino Acid Sequence
>type VI secretion protein
MRVLPDAVCWHEGMQLLPQHFQLQGLRAEVLSARLAHAANPWFWGLEHLELDPSALSTGVVRILALEAILPDGLPVSLGQGGTLVFDATAAIAAAADASI TLYLALSPLARGGQVLPLKGRLQSLSGPAVPDLASGENPEPVVVWRPALRLVTEAQRADSVCLPLLRVGKDAGGFVGLPYVAPTPRIAPASMLGQALVAL CAHAREKCVFLAGRLRQAQQAENTEDSQEIRRQLAALWARLPELEAALYSGTASPAQLHGLLCGMAGSWSVLDPLGGVPAFPTFDFNELLRTFNPVIEWL EVTLGRVRAGYRSLAFERLGNDFALALPDLRSPVQRLVIGLRMPPGCGEEQAHEWLSRCIVASESSLAILGRQRMSGLEHLPMSRAEQIAYSVGEDTHLF VVQAEGDWFDPAQRLCLRAASAGSSGGGSPWQVVLFIVDGASSA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site