Pseudomonas sp. 21, UB43_RS05395

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig2, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGCTCGCATCGACGCGGCCGGCGTCAGCGCACCGCAGGCGCTGGAAGCAAATGGCGGCGCCTGGGTCGATGGCTACCTGGTGGCCGAGCGCATGCGCCTG GGCGACTTCCTTGCCGAGCTGGACCGTTATCGCCCCGGCCTGCTGCGCTGCGATCCGGCGGTTGCGGGTGTCCGCCTGAGCGGCTCCTACCCGCTGGCCG ATACCGACCGGGTGCTCGCCATGCTGCAGGACAGCCTGCCGGTGACGGTCCAGCGACGCACCCGCTACTGGGTGACCGTAGGCCCGCGCTAAGGAAAGAA GCCGAGCGCCGCGGAAAATCGCAGCCAAGTGCCGCGGAAAATCGCAGCCGAGCGCTGCGGAAAAAGGCAGCCGGGCGCCGCAAGAAAGCACCAATGAAAA TAATTCTCGAAAAGTCGGCAGGTTTTCGTTTCTCGCTTGGCCTAGGGATAAATCCCTGCTCGCCACGGCGGGCCAACAACGAGAAACGGACCCTCCGCCC
DNA Sequence for Gene
>UB43_RS05395
ATGACGCTTCACCCCATCACCCGCGCCCTGCGCCAGTCGCTCGGCCTTGCCCTGCTGTCCTGCTCCACGCTCACCCTGCTGCCGGCCATGCCGGTGCAGG CTGAATCCACGACCAGCCGCACCCAGCAATACGCCATCCCCGCCGGCCCGCTGGACCAGGTGCTCGGCGAGTTCGGTCGGCGCGCCGGCATCCCGATCTC CGTCAATGCGGGCCTGACCGAAGGCAAGCGCAGTGGCGGGCTGAACGGTGAGTACGGCATCGAGGACGGTTTCGCCCGCATCCTCTCCGGCACCCGCCTG ACGGTGCGCCGTCTGGAAAACGGCGGCTACGGCCTGGTGCCGACACCGTCGGATGCGGTGCTGGAGATGGATTCCACCACCGTGTCCAGACAGGCGCTGG ACGCGACCACCGAGGGCACCAACTCGTATGCGGCTCGTGCGGTCACCCTCGGCAAGGGCGTGCACAGCCTGCGCGAAACACCACAATCGGTGACGGTGCT GACCCGTCGCTATATGGACGACCAGAACGTCACCACCATCGAGCAGGCGATGGAAAAGACGCCGGGCATCGCCGTGTACGAGTCACCCATGGGCGGCAAG TATTTCTACTCCCGCGGCTTCATGATGCAGGGCCAGTACCAGTACGACGGCGTGCCGCTGGATGTCGGCGGCGAGTATGTGCAGGCCAACAGCTTCTCCG GCGACATGGCCTTCTACGACCGGGTCGAGGTGCTCAAGGGCGCAGCGGGCATGCTCAAGGGCTCGGGCAGCTCCACCGGCGGCGTCAACTTCGTCCGCAA GCGGGGCCAGAGCGTGCCGCAGACCAGGCTGTCGCTCTCGGCCGGCTCCTGGGACAACTACCGCGGCCAGGTGGACACCGGTGGCCCGCTCAACGAGTCC GGCACCCTGCGCGGGCGGACTGTCGTGGCGGTGCAGGACCGCCAGTATTTCTACGATGTCGGCAAGCGCAATGACCAGATTCTCTACGGCGCGCTGGACT ACGACGTGACCCCGGATACCACCCTGGGCCTGGGCGTTGCCTACGAGAAGCTGGATGCGACGCCCTGCTGGCACGGCCTGCCGCGCTACAGCAACGGCAA GGACCTGAAGCTCAGCCGCTCGACCTGCCTGGGCGCTTCCTGGAACAACTGGGAAAGCGAGCGCACCACGCTGTTCGCCGACCTGTCCCACCAGTTGAAC GAGGACTGGGCCTTCCGGTTCGCCGGTGTCTGGACCCACAACGACCAGGACATCAAGTACGCGCTGTCCGAGACGTCGGGTGGTGTTACACCGGGTGCGA CCTCGGCGCCTTCCTCGGTGTACTCCGGTCTGTTCGACTACGACCAGACCGACTACGGCTTCGATGCCTACCTGGACGGAAAATTCGAGGCCTTCGGCCT GCAGCACGAGCTGACCGTCGGCGCCAACGCCAGCCGCGCCAAGACCCACGATCACTACGCGCTGATCAACATGACCAGCCTGCTGGGTACCTCGCAGGAC CCGTTCCATCCCAACTCGCAGATTCCCGAGCCGGCGGATGATTTCTACCCGCCCAACTCCTACCGCGGCGGGCCGCAACCCACCGAGTCGGACACCCGCC AATTCGGCACCTACGCGACCTTGCGGCTGAAGCTGGCCGAGCCTTTGACTGCGGTGCTGGGTTCGCGCGTCAGTTGGTACCGCAACAGCCGCGACTCCTA CACCCAGGCCTGGGATTACTGGCAGCACGACCGCAGCCAGGAGAACGGCCAGGTCACACCCTTCGCGGCACTGATCTACGACCTCAACGATGAGTGGTCG GTCTACATCAGCTACGCGGACATCTTCCAGCCGCAGAGCACCTACACCGACGAATCCGGCAGCCCGCTGCAACCCAAGACCGGCGCCAGCTACGAGCTGG GCATCAAGGGCGAGCTGCTGGATGGCCGGGTCAACACGGCCTTCAACCTCTTCCGCACCCTCGAGGAGCACCGCGCCGAAGCCAACTACGACACCACTTG CCTCGGCTCCTCCGACGGCTACTGCTACACCGACGTGGGCAAGGTCCGTGCCCAGGGCTTCGAGGCGGAAATCAGCGGCGAGGTCATCGACCGCCTGCAA TTGCTGGCCGGCTACACCTACACCCAGACCAAGTACCTCAACAGCACGGAAGACAATCCGCAGGAACCCACCTTCACCACCAGCTACTTCCCGCGCCACC TGTTCCGTGCCTGGGCCGATTACCAGCTGGCCGGCGAACTGGACCGCTGGAGCGTGGGGGCGGGCGTGACGGCGCAGAGCGACACCTCCGTACGCAGCGG CAACGTGAAGTCGGTGCAGTCCGACTACGCCATCTACAGCGGCCGCCTGGGCTACCGCATCGACGACCACTGGAGCGTCGCGCTCAACGGCAACAACCTG TTCGACAAGAAGTACTACCAGAGCGTCGGTGCCGTTTCCTGGGGCAACTTCTACGGCGAGCCGCGCAACTTCATGGTCACCCTGCAGGGTTCGTTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGCGGATATGGGCCGATGCCAGGATTCGCTGCTGATGCGTGTTGACCTCAACCTAGGTTGAGGTCCTAGAGTCCGTCCGGGCCTGCCTGCCGCTGTTCGC CAGCGGTGGGCCGGCACCTTCGGAACATGACCGCACAAGGACCCGGTATGGATACCCACGCTTCACTGATGATCTTCCAGATCGTCTGCTTCCTGGGCTT CAGCCTCTGGCTGAGCATCGCGCTGATCAACAACCTGCACGCCTTTTCCAGCTCGGTCGCGGCGGTCGGCGCGACCATGGCGATGGCACCGCTGCGCCAG CCACCCGCGATCGACTTTCCCCTGCTACGGCGTGCACTGACGTCACCGGCGCTGCATCGGCTGGCCATGATCGTCGTCGTCCTGCTGCAGGCCCTGGCGG TGCTTGCGGCCTGGACGGGTTGCTACCACTGGCTGCTGGGCGGCGAACTCGAAGCCGCCAGGCCCTGGCTGAACCTCGCCCTGAGCGCGGCACTGGGCTT
Amino Acid Sequence
>TonB-dependent receptor
MTLHPITRALRQSLGLALLSCSTLTLLPAMPVQAESTTSRTQQYAIPAGPLDQVLGEFGRRAGIPISVNAGLTEGKRSGGLNGEYGIEDGFARILSGTRL TVRRLENGGYGLVPTPSDAVLEMDSTTVSRQALDATTEGTNSYAARAVTLGKGVHSLRETPQSVTVLTRRYMDDQNVTTIEQAMEKTPGIAVYESPMGGK YFYSRGFMMQGQYQYDGVPLDVGGEYVQANSFSGDMAFYDRVEVLKGAAGMLKGSGSSTGGVNFVRKRGQSVPQTRLSLSAGSWDNYRGQVDTGGPLNES GTLRGRTVVAVQDRQYFYDVGKRNDQILYGALDYDVTPDTTLGLGVAYEKLDATPCWHGLPRYSNGKDLKLSRSTCLGASWNNWESERTTLFADLSHQLN EDWAFRFAGVWTHNDQDIKYALSETSGGVTPGATSAPSSVYSGLFDYDQTDYGFDAYLDGKFEAFGLQHELTVGANASRAKTHDHYALINMTSLLGTSQD PFHPNSQIPEPADDFYPPNSYRGGPQPTESDTRQFGTYATLRLKLAEPLTAVLGSRVSWYRNSRDSYTQAWDYWQHDRSQENGQVTPFAALIYDLNDEWS VYISYADIFQPQSTYTDESGSPLQPKTGASYELGIKGELLDGRVNTAFNLFRTLEEHRAEANYDTTCLGSSDGYCYTDVGKVRAQGFEAEISGEVIDRLQ LLAGYTYTQTKYLNSTEDNPQEPTFTTSYFPRHLFRAWADYQLAGELDRWSVGAGVTAQSDTSVRSGNVKSVQSDYAIYSGRLGYRIDDHWSVALNGNNL FDKKYYQSVGAVSWGNFYGEPRNFMVTLQGSF
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site