Pseudomonas sp. 21, UB43_RS27260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 21 contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGTGCCCGCCAGCTCCGTCAGGATGCCCAGCAGCAACGTCACACCGAGCTGCTGCAACGCCTGTTGGCCTGAAGTCGCCGAGAGAAGGCACTTCCATAA AGATTGGCGATTTTTTAGACTACCCAGTCCGCCCGGCATTTTCCGGGCCTACATTTTAGTAACGAGGAACACCATGGCCCGCGTCACCGTTGAAGACTGC CTGGACAACGTCGATAACCGTTTCGAGCTGGTCATGCTCGCCACCAAGCGTTCGCGTCAGCTGGCCACTGGCGGCAAAGAGCCGAAGGTACCGTGGGAAA ACGACAAGCCCACCGTCGTTGCCCTGCGTGAAATCGCTTCCGGCCTGATCGACAACGAAATCGTTCTGCTGGAGGACGTGGTTGAAGAAGAACCGCTGTT CGCTGCCTTCGAAGACGAGGCCAACAACGAGGCCCTGTAAGTCGATGTCCGGCCGACGAATCGGTGCACTGCGACGTACCGCTCGGCAGGGGGTGAACCC
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| DNA Sequence for Gene |
>UB43_RS27260
ATGCCGAGCATAGATGCCTTCGCCGATCGTCTGTCGAGCTATCTGGGCCCGGACCAGGTCAACCTGGTCCGCCGCGCCTACTACTACGCCGAGCAGGCCC ATGACGGGCAGCGCCGCCGCAGCGGCGAGGCTTACGTCACCCATCCGCTCGCCGTCGCCAATATCCTCGCCGACATGCACATGGACCATCAGAGCCTGAT GGCGGCCATGCTGCACGACGTGATCGAGGACACCGGCATCGCCAAGGAAGCGCTCACCGCGCAGTTCGGCGAGACCGTCTCGGAACTCGTGGATGGGGTC AGCAAGCTGACCCAGATGAACTTCGAGTCCAAGGCCGAGGCGCAGGCCGAGAACTTCCAGAAGATGGCCATGGCCATGGCGCGCGACATCCGCGTGATCC TGGTGAAGCTGGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGTGAGAAGCGCCGGCGCATCGCCAAGGAAACCCTGGAAATCTACGC ACCCATCGCCAACCGGCTGGGCATGCACAGCATGCGCGTGGAATTCGAGGACCTGGGCTTCAAGGCCATGCACCCGATGCGCTCCGAGCGCATCCGCCAG GCCGTGAAGAAGGCTCGTGGCAACCGCCGCGAGATCGTCGGCAAGATTCAGGAATCGCTGGTCAACTGCCTCGCCCGCGAAAACATGGAAGGCCAGGTCC TGGGCCGCGAGAAGCACCTGTTCAGCATCTACAAGAAGATGCGCGGCAAGCGCAAGGCGTTCAACGAGATCATGGACGTCTACGCCTTCCGCATCGTGGT CGACAAGGTTGACACCTGCTACCGCGTGCTCGGCGCCGTGCACAACCTGTACAAGCCGTTCCCCGGCCGCTTCAAGGACTACATCGCGATTCCCAAGGCC AACGGCTACCAGTCGTTGCACACCACGCTGTTCGGCATGCACGGCGTGCCCATCGAAATCCAGATCCGCACCCGCGAGATGGAAGAGATGGCCAACCACG GCATCGCCGCGCACTGGCTGTACAAGTCCAGTGAAGAGGAAGCGCAGAAAGGCACCCATGCCCGCGCCCGCCAGTGGGTAAAGGGCATCCTCGAACTGCA GCAACGCGCCGGCAACTCGCTGGAATTCATCGAGAACGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTCTTCACGCCCAAGGGCCGCATCATGGAG CTGCCCAAGGGCTCCACGGCCGTCGACTTCGCCTACGCGGTGCACACCGATGTCGGCAACAGCTGTATCGCCTGCCGTATCAACCGCCGCCTGGCGCCGC TGTCCGAACCGCTGCAGAGCGGTGCGACAGTGGAAATCGTCACCGCGCCGGGCACCCGGCCGAACCCGGCCTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATCCGCCACGCGCTCAAGCTGCAGCGCCGCTCCGAGTCGATCAACCTCGGCGAGCGCCTGCTGAACAAGACCCTCGCCGGCTTCGACAGC CACCTGGAGAAGATCCCGCAGGAGCGCATCCAGGGCGTGCTCAACGAGTACCGCATGGAAGTCTTCGAGGACCTGCTCGAAGAGATCGGCCTGGGCAACC GCATGGCCTACGTGGTCGCGCGCCGCCTGCTGTCCAGCGAAGGCGAACAGGCGCCCAGCGCCGAAGGGCCGCTGGCGATCCGCGGTACCGAAGGCCTGGT GCTCAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATCGTCGGCCACCTGTCCGCCGGCAAGGGCATGGTCGTGCACCTGGAGAACTGCCGG AACATCAGCGAAATTCGCCACAATCCGGAAAAGTGCATCCAGCTCAGCTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAACTGCGTGTCGAGCTGG AACACCAGCGCGGCCTGATCGCCCTGCTGGCGACCAGCGTCAACGCCGCCGACGGCAACATCGAGAAGATCAGCATGGACGAGCGCGACGGTCGCATCAG CGTGGTCCAGCTCGTCGTCAGCGTGCACGACCGTGTGCACCTGGCCCGCGTCATCAAGAAGCTGCGCGCGCTCAAGGGCGTGATCCGCATCACCCGCATG CGCAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCACCCCGTTAGGAGTCGACATGACCAAGACCGTTATCCACACCGACAAAGCCCCGGCCGCCATCGGCACTTACTCCCAGGCGATCAAGGCTGGCAAC ACCGTCTATGTCTCCGGCCAGATCCCGCTGGACCCGAAAACCATGGAACTGGTCGAGGGCTTCGAAGAGCAGACCGTCCAGGTCTTCGAGAACCTGAAAG CCGTCATCGAAGCGTCCGGCGGCTACCTGCACGACGTCGCCAAGCTGAACATCTTCCTCACCGACCTGTCGCACTTCGCCAAGGTCAACGAGATCATGGG CAAGTACTTCGTCCAGCCCTACCCGGCCCGCGCCGCCATCGGCGTCGCCGCCCTGCCCAAGGGCGCCCAGGTCGAGATGGACGCCATCGTCGTCCTGGAA TAAGCGCTGCGAAAAACCTACGGGGCCCTCGGAGGGTCTGATGTCGTTTCGACGTGGCCGCGACGGAGCCGCATTTTGCGCAGGGCGAGGCGCGAATCGT
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDAFADRLSSYLGPDQVNLVRRAYYYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALTAQFGETVSELVDGV SKLTQMNFESKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHSMRVEFEDLGFKAMHPMRSERIRQ AVKKARGNRREIVGKIQESLVNCLARENMEGQVLGREKHLFSIYKKMRGKRKAFNEIMDVYAFRIVVDKVDTCYRVLGAVHNLYKPFPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANHGIAAHWLYKSSEEEAQKGTHARARQWVKGILELQQRAGNSLEFIENVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGATVEIVTAPGTRPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKTLAGFDS HLEKIPQERIQGVLNEYRMEVFEDLLEEIGLGNRMAYVVARRLLSSEGEQAPSAEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLENCR NISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLATSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALKGVIRITRM RS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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