Pseudomonas sp. 21, UB43_RS25725
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 21 contig11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCTGGCACGTCAGCCGCGCCGCGCAGCAGCTGGGCATCAGCCGCAACACGCTGTACCGCAAGCTCAATCGCCATGGGTTGCGGCGGCAGGTCTGAGC CTTGGCGGTTCGCGAGCAAGCTCGCTCCTACAACAAGCCTGCGCCCCGGCTGCTCTTCGTAGGACCGAGGGGGGCGCCTAGCCCTTGCTCGCGAACGGAT GCCCGGATCGTTCGGTGGTTGGGCGGTGCTCCGCTCCCTCTCCCTGACCTGGCCCTCTGGGAGAGGGCTGGGGTGAGGGGACAGAGCGCCTGGCAAGCTG GAGCCGGGCTCTGAAACCGCATGGGTATCGCTTCGCTCCACCCATCCTACGGTCCTTGCCTGTGACGGCTTTCGCTGCTCACCGGGAACCGTCTCCCCAC CTCGTCGTCTGATGCCCCGGCGGCCGGCCGCGCGGGGGCGCGCTGTGCTACTCTGCCGCCCATTCGAAGCGCCTGGAAAGGCTTGATTGCAGGAGTCTGC
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| DNA Sequence for Gene |
>UB43_RS25725
ATGCATATCCACATCCTCGGCATCTGCGGCACCTTCATGGGCTCGCTGGCCGTCCTGGCCAAGGAGCTGGGCCACCGCGTGACCGGTTCCGACGCCAACG TCTACCCGCCCATGAGCACCCAGCTGCAAGCCCAGGGCATCGAGCTGATGCAGGGCTACGACCCCGCGCACCTGGAGCCGGCCCCGGACCTGGTGGTGGT CGGCAACGCGCTGTCGCGCGGCAACCCCGCCGTGGAATACGTCCTCAACAAGGGCCTGCCCTATGTGTCCGGTCCGCAGTGGCTGGCTGACCACGTGCTG CAGGGCCGCTGGGTCCTGGCGGCTGCCGGCACCCACGGCAAGACCACCACCAGCAGCATGCTGGCCTGGGTGCTGGAGCATGCCGGCATGAGCCCGGGCT TCCTGATCGGCGGTGTGCCGCAGAACTTCGGCGTCTCCGCGCGACTGGGCGGCACGCCGTTCTTCGTGGTCGAGGCCGACGAGTACGACAGCGCCTTCTT CGACAAGCGCTCCAAGTTCGTCCACTACCACCCGCGCACGGCGATCCTCAACAACCTGGAATTCGACCACGCGGATATCTTCCCCGACCTGGCCGCCATC GAGCGGCAGTTCCACCACCTGGTGCGGACCATCCCCGGCGAAGGCCTGGTCATCCACCCCACCTCCGAAACCGCGCTCAAGCGCGTGATCGGCATGGGCT GCTGGACGCCGGTACAGACCACCGGCGAAGGCGGCCAGTGGCAGGCGCGCCTGCTCAGCGAAGACGGCTCGCACTTCGAAGTCCTGTTCGACGGCAAACC CCAGGGCACCGTGGACTGGGAACTGACCGGCCAGCACAACGTCGCCAACGCCCTGGCCTGCCTCGCGGCGGCCCGCCATGTCGGCGTGGTGCCGGAGCTG GGCTGCGCCGCGCTGTCGGCCTTCAAGAGCGTCAAGCGACGCATGGAGAAGGTTGCCGAGGTCAAGGGCATCACCATCTATGACGACTTCGCCCACCACC CGACCGCCATCGCCACCACCCTCGACGGCCTGCGCAAGCGCGTCGGTGATGCGAAGGTGATCGCCGTGGTCGAGCCACGCTCCAACTCCATGAAGCTCGG CGCCCACCGCGACGGCCTGCCGGAGTCCGTGGTGCAGGCCGACAACGTGTTCTGGTACGCCCCGCCGAACCTCGGCTGGGACCTGGCCGCCACCGTCGCC GGCTCCACCGTGCCCACGCAAGTGTGCGACTCGCTGGAAGCCATCATCGAGGGCGTGAAGGCCATCGCCACGCCGGGCACCCAGGTGGTGGTCATGAGCA ACGGCGGCTTCGGCGGCCTGCACGGCAAGCTGGCCCAGGCACTGGAGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCATGGCCGGAGCCGAACGCGTCACCCTCGCCATGACCGGTGCCTCGGGCGCCCAGTACGGCCTGCGCCTGCTCGACTGCCTGGTGCAGGAAGACCGCGA GGTGCACTTCCTCATCTCCAAGGCCGCGCAACTGGTGGTGGCCACCGAGACCGACGTGACCCTGCCGAGCAAGCCGCAGGCGATGCAGGCTTTCTTGAGC GAATACACCGGCGCCGCGCCGGGGCAGATCCGCGTGTACGGCAAGGAAGACTGGATGGCCCCGGTGGCCTCCGGCTCCGGCGCACCGAGTGCGATGGTGG TGGTGCCCTGCTCGACGGGGACGCTCTCGGCCATCGCCACCGGCGCCTGCAACAACCTGATCGAACGCGCCGCCGATGTGGCGCTGAAGGAGCGCCGCCA GCTGATCCTGGTGCCGCGCGAGGCGCCGTTCTCCAGCATCCACCTGGAGAACATGCTCAAGCTGTCCAATATGGGCGCAGTGATCCTGCCGGCTGCTCCG
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLQAQGIELMQGYDPAHLEPAPDLVVVGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAAAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFGVSARLGGTPFFVVEADEYDSAFFDKRSKFVHYHPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRTIPGEGLVIHPTSETALKRVIGMGCWTPVQTTGEGGQWQARLLSEDGSHFEVLFDGKPQGTVDWELTGQHNVANALACLAAARHVGVVPEL GCAALSAFKSVKRRMEKVAEVKGITIYDDFAHHPTAIATTLDGLRKRVGDAKVIAVVEPRSNSMKLGAHRDGLPESVVQADNVFWYAPPNLGWDLAATVA GSTVPTQVCDSLEAIIEGVKAIATPGTQVVVMSNGGFGGLHGKLAQALEG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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