Pseudomonas sp. 21, UB43_RS23405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 21 contig10, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
AATGCCGACGAGCTCACAGTTGCGGTGGTCGATATCGGCGCCACCATGACCACGCTCAGCGTCCTGCACCACGGCCGCACCATCTATACGCGTGAGCAGC TATTCGGCGGGCGTCAGCTCACCGAGGAGATCCAGCGTCGCTATGGGCTGTCGGTCGAGGAAGCGGGTCTTGCCAAGAAGCAGGGCGGTCTTCCGGATGA CTACGACAGCGAAGTGCTGCAGCCGTTCAAGGACGCCGTGGTTCAGCAGGTGTCGCGTTCGCTGCAGTTCTTCTTCGCGGCCGGCCAGTTCAACGATGTG GACTACATCCTGCTGGCGGGAGGCACTGCGTCCATCCCTGACCTGGATCGCCTGATCCAGCAGAAGATCGGCACTCCGACCCTGGTGGCCAACCCGTTCG CAGACATGGTGCTGAGCGGCAAGGTCAACGCCGGTGCGCTGGCCAGTGATGCGCCTGCGCTGATGATTGCCTGCGGTCTGGCGATGAGGAGTTTCGACTG
DNA Sequence for Gene
>UB43_RS23405
ATGGCACGCATCAACCTATTGCCGTGGCGGGAGCAGCTGCGCGAGGAGCGCAAACAGCGCTTTCTGGTGATCCTGGGTGCCGTTCTGCTGGCTTCCGGGG CGATCGTTTTCCTGGGTGATCAGTACTTCAACTCTGCCATCGAGAACCAGGCTGCGCGCAACGACTTCCTGCGCAAGGAAATCGCCGTGCTGGATGCTCG AATCAAGGAGATCAGTGAGCTGAAGACCCGTCGCCAGCAACTGCTGGAGCGGATGAAGATCATTCAGGACCTGCAGGGCAACCGCCCGATCATCGGCCGG GTGTTCGACCAACTGGTCCGCACTTTGCCCGATGGCGTCTTCTTCACTGAATTGAAGATGTCCGGGAAGTCCATTGCCATTGCCGGCGCGGCCGAGTCCA ACAACCGCGTCTCCAATCTCATGCGCAATCTCGATTCGTCCGAGTGGCTGACTTCGCCGAACCTGACCGAAGTGAAGGCCGTTACCCAGGGCGCCCTGGA TCAGGCGAACGTCTTCCAGTTGACGGTGCAGCAGACCCAGCCCGGCAGCGAGGAGCAGGACAAGCAGAGTACCCCGCAAGGAGCCAAGAAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTCTGGCCAGTTCTCTGGAGAGCTTGCGCAAGGTCGATATCAACGATCTTGACCTGAACAACCTTGGTTCCTGGCCGGCGGCAGTCAAGGTCATCGCCTG TATCCTGCTGATGGCCGTGGTTCTGGCGCTTGGCTACAACTTCCATCTGAAGGACCTGCAGGGGCAGCTCGATCGCAATCGCGAGGAAGAACAGACCCTC AAGCAGCAGTTCTCGACCAAGGCCTTCCAGGCGGCGAACCTGGAAGCCTACAAGGTGCAGATGAAGGAGATGGAAGAATCCTTCGGCGCCTTGCTGCGTC AACTGCCGAGTGATACCGAGGTGCCCGGTCTGCTGGAAGACATCACCCGCACCGGACTGGGTAGCGGGCTGGAGTTCGAAGAGATCAAGTTGCTGCCGGA AGTGACTCAGCAGTTCTATATCGAGCTGCCGATCCAGATCAGCGTCGTAGGCGGGTACCACGACCTGGCGACCTTCGTCAGTGGCGTGTCCAGCCTGCCG
Amino Acid Sequence
>pilus assembly protein PilN
MARINLLPWREQLREERKQRFLVILGAVLLASGAIVFLGDQYFNSAIENQAARNDFLRKEIAVLDARIKEISELKTRRQQLLERMKIIQDLQGNRPIIGR VFDQLVRTLPDGVFFTELKMSGKSIAIAGAAESNNRVSNLMRNLDSSEWLTSPNLTEVKAVTQGALDQANVFQLTVQQTQPGSEEQDKQSTPQGAKK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site