Pseudomonas sp. 20_BN, BN1079_RS16025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCTGGCGGTCAACGCGGTGGTCATGGCCGAGATGTTCTACCTGCTCAACAGCCGCTCGATCTTCGCTCCGGTGGTCAACCGCGCCGGCCTCACCGGCAA TCCCTATGTGCTGCTGGCCATCGGCACTTGCGTGCTGCTGCAGCTGTCCTTCACCTATACGCCGCTGATGCAGGACCTGTTCGGCTCGACCGCACTGACT CCCGTGGAGTGGCTAAAGGTAATCGGCGCCGGGTTGCTGGTGTTCTTCGTCGCCGAACTGGAGAAGGTTGTGATGCGCCGCACGTCGCTGGCGTCCAGCG ACTGCAGCAGCGCCTACTGAATGATGGGCATTTGCCATATCCCGCTCCGGCATGCCACGCTTCTGCTACTGTCAATGCAGGTCATGAAGCGTTGGAAGAG GTGCGAGGCAGGCGAGGCGAGCCTCCTTTAACGACACATTGCCCAAGCAGGTGGCTTTTCAACGGCCAGACGAGTACCGGCCCGGAAAAAGGATTCTCTC
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| DNA Sequence for Gene |
>BN1079_RS16025
TTGACCGAACTGCGCAACAGACTCTCGCGAAAACTGCTACGTGTGGTCTTGCTGTCGGCGCTGGCCGTCGGGCTGGTGCTGAGTTGTGTACAGATCGTTT TTGACGCCTATAAAACCCACCAGCTGATCGAAGCCGACGCACAGCGCATCCTGCGCATGAGTCGCGACCCCTCCACCCAGGCGATCTACAGCCTGGACCG GGAAATGGGCAGGCAGGTCATGGAGGGCCTGTTTCAGCACGAGTCGATTCGCACGGCCTTCATCGGTCACGCTGACGATGATCCCCTGGCCTACAAGACC CGCCCACCGATAGAGGCGTCAACACGCTGGCTGACTGACATGATCCTGGGGCAGGAGCGGGAGTTTTCCGTCTCGCTGGTGGGCCGCCCGCCAGCCAGCG AGCACTACGGCGACCTGCATATCACCCTCGATACAGCACCCTACGGCCAGACACTCGTTGAAAATTCTGTGTTGCTGTTCTGCCTCGGCCTGCTGCGTGC CGCGACGCTGGGCCTGGTGCTTTACCTGATCTACGAGTGGCTGCTGACGCGACCACTGACCAAGATCGTCGAGCATCTGGCGCGCATCAACCCCGACCAT CCGGGTGAATACAAACTGCCGATGCTCAAGGGCCACGAGAAAAATGAGTTGGGGCTGTGGGTGGAAACCGCCAACGGGCTGCTCTCGGCTATCGAACACA ACATGCGATTGCGCCACGCGGCCGAAAGCAGCCTGCAGCGTATGGCGCATTATGACCTTCTTACCGGCCTACCCAACCGCCTGCAGTTGCAGCAGCAGCT TGGCCATATCCTCAGCGAAGCCGATCGGCTGCAACGGCCGGTAGCGGTGCTGTGCCTGGGGCTGGACGACTTCAAGAGCATCAATGAGCAACACAGTTAC CAGAGCGGCGACAAGTTGCTGATTGCCATGGCCGATCGCCTGCGCAAGCTGAGCGGCCAGACCAGTGCGCTGGCGCGCCTTGGTGGCGACCAGTTCGTGC TGGTGATGACCGGTTTCAAGCAACCTGACGCAGTCGCCGAACTGGCGCAGACAATCCTCGACAACCTGGACACCCCGTTCATCCTCGACCAGAAGCCGAT CCGCTTACGCGCCACCATCGGCATCACGCTCTACCCCGAAGACGGCAACAGCACGGAGAAGCTGCTGCAGAAAGCCGAGCAGACCATGACGCTGGCGAAG AGCCGTTCGCGCAACCGCTACCAGTTCTACATTGCCAGCATCGACAGCGAGATGCGCGAGCGTCGCGAACTGCAGAAGGACCTGGCCGAGGCCGTCAAAC GCGGCGAATTTCATCTGGTCTACCAGCCGCAGGTCGATTATCGCCTCAAGCGCATCACCGGCGTCGAAGCCCTGTTGCGCTGGTCGCACCCAAGCGGCAA GTTCATTCCACCGGATGTCTTCATTCCACTCGCCGAGCAGAGCGGCAGCATCATTGCCATCGGCGAGTGGGTCTTGGACCGGGCCTGCCGGCAACTGCAG GAATGGCATCAGCTGGGCTTCAGCGATCTGCGCATGGCGGTCAATTTGTCTGCCGTGCAGCTACACCATGCCGAACTGCCGGGAACCATCCGCGGGCTGC TGGAAAACTATGGCCTGCCGGCCGAGAGCCTTGAGCTGGAAGTGACCGAAACCGGGCTGATGGAGGATATTGTCGCGGCCAGCCACAACCTGCATAGCCT GCGCCGCTCGGGAGCACTGATCGCCATCGACGACTTCGGCACTGGCTACTCTTCCCTCAGCTATTTGAAGAATCTGCCGCTGGACAAGATCAAGATCGAC AAGAGTTTCGTGCGTGACATGGGCACCGACGAGGGCGATGCAACCATCGTCCGGGCCATTATCCAGCTGGGCAAAAGCCTGGGCATGCTGGTCATTGCCG AAGGTGTGGAAACGGCAGAGCAGGAACGCTATCTCATCGAAGAAGGTTGCAACGAAGGCCAGGGCTACCACTACAGCAAGCCGCTGCCTGCAACAGAGCT GCTCGGCCTGTTGCAGCACTCATTCTTCGAACAACCCGTCAATCCCGAAATGCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGCTGCTCAGGCCAGCCTGGAAGCCAGGAGCAGTGCGCCGCACAGGCACAGCAAGGCACCGCCAGAAGCCTGCCAACGATAGCGCCGCGCCAGAACTT CCTCGCCATGGCTGGATAACACGAACGGCTGGCGCTGCGCCGGGCGCGCCAAACGGTGTTGCGCGGGGCGGGTGCTGGCCAGACGGTGACGATCCTCGGC TTCAAGTCTCGCGGCCAGGCGCACGCGCTGCCATTCGGCCAGGTCGAGCTGGCCGTCACCGTTGCTGTCGAAACGTTTCAGCAGGCCGGCGTAATCGCCC TTCCACTCCCGGAGAATCTGCATCTTGGAGGCCTGCCGATCGAAGCCCTGCCGGCCGCCACCTACGGTGGAGAAATCACCGATGGCGTACAGCGGCTCAC CGGCGTGCAGACGTTCCTCGGTGTAACGATAGCGGCGTCCGCCGGTGAGCCAGGCCAGCACGCCCGTCGGCGGCAGCCCCCTGGGATGGCGCAGATTGCC
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| Amino Acid Sequence |
>diguanylate cyclase
MTELRNRLSRKLLRVVLLSALAVGLVLSCVQIVFDAYKTHQLIEADAQRILRMSRDPSTQAIYSLDREMGRQVMEGLFQHESIRTAFIGHADDDPLAYKT RPPIEASTRWLTDMILGQEREFSVSLVGRPPASEHYGDLHITLDTAPYGQTLVENSVLLFCLGLLRAATLGLVLYLIYEWLLTRPLTKIVEHLARINPDH PGEYKLPMLKGHEKNELGLWVETANGLLSAIEHNMRLRHAAESSLQRMAHYDLLTGLPNRLQLQQQLGHILSEADRLQRPVAVLCLGLDDFKSINEQHSY QSGDKLLIAMADRLRKLSGQTSALARLGGDQFVLVMTGFKQPDAVAELAQTILDNLDTPFILDQKPIRLRATIGITLYPEDGNSTEKLLQKAEQTMTLAK SRSRNRYQFYIASIDSEMRERRELQKDLAEAVKRGEFHLVYQPQVDYRLKRITGVEALLRWSHPSGKFIPPDVFIPLAEQSGSIIAIGEWVLDRACRQLQ EWHQLGFSDLRMAVNLSAVQLHHAELPGTIRGLLENYGLPAESLELEVTETGLMEDIVAASHNLHSLRRSGALIAIDDFGTGYSSLSYLKNLPLDKIKID KSFVRDMGTDEGDATIVRAIIQLGKSLGMLVIAEGVETAEQERYLIEEGCNEGQGYHYSKPLPATELLGLLQHSFFEQPVNPEML
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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