Strain | Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TGGCGTGTTCGGCGGCCTGGGTCTGGGTCTGCTGATCCTGGTGCTCAACATCGGCCTGTTCGCCAATATCAACCAGTTGCAAGGCGTCGAGATGCCGACT TTGGCGCTGGCCTCGCGGATCTCGCCGATTCTCTCAATGGTGATGTCGGTGGCGCTGATCTGCATGATCTACAGCACTGCTGTGGGCATGTTCTTCGCTT TCAGCGCACGCTTTGCCAAGCCTGAGTCGACACGCTTCAAGGGTTTCAGTGCAATATCCGTGTGCATTGGTCTGGCCCTGAGCCTGGGCGGTTTCAGCAA GCTGGTTGGTACCGTCTATCCGCTGCTGGGCTATGTAGGCTTCGCCCTGATCCTTGCCATCGCTTACAGCTGGATCCGCAACCGCTCCGGTGCGACCGTC GAGGTGCAGAAGAGCAAGTTGAACCCGCTGGTTTGACCCTCGCAGGCAGCGGGTCGCCTGTCAGGGTGGCCCGCTGCCATTCGTATCCAGGAGAATGCCG
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DNA Sequence for Gene |
>BN1079_RS13650
ATGCCGATCAAGCGCTTGCACACCGAGGTCCGCTACAGCGACATAGTGATCAACCAGGGCACCGTTTATCTGTCGGGCCAGTTGGCTGATGATCTTGCCG GCGATATCCGCCAGCAGACTCGCGAAACGCTGGCCCATATCGACCGGCTTCTGGCCGAAGCCGGCACAGACAGGTCGCATCTGCTTTCGGCGCTGATCCA TCTGCGCGATCTGGCTGACTACGCAGGCATGAACGAGATCTGGGACAGCTGGCTGCCCTCGGGCGCCGCTCCGGCTCGCACCACGGTCCAGGCGATGATG TATGCGCCGCAGGTGCGCGTGGAGATCACCGTGGTGGCTGCGCTGCCGGAACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TAGCTCATGCTCCGGGCGCCTAACGAAGCTTTGAAGTGTTGAAAATATCGAACGCCCTCGCCATCATAGGGGCTTCCGATTTTCGCGCTTGATTGGGGGC TCCCGTATTGGACGTCGGCGTTCGACTGCAAACCATCCGCAAGCTCAAAGGTCTTTCCCAGCGTGAACTCGCCAAGCGTGCCGGGGTGACCAACAGCACC ATTTCCATGATCGAGAAGAACAGCGTCAGCCCCTCGATCAGTTCGCTCAAGAAGGTACTGAGCGGCATTCCAATGTCGCTGGTGGAGTTCTTTTCTCCGG ATTTTGAGCAGGATAGCGAGACCCAGGTGGTTTACCGGGCTGGCGAACTGATCGATATTTCCGACGGCGCCGTCAGCATGAAACTGGTGGGCAAGGCGCA TCCGAGCCGGGCCATCGCCTTTCTCGACGAGACCTATCCGCCGGGTAGCGACACGGGGCAGGAGATGCTCACACATCAGGGCGAAGAGGCCGGCATGCTG
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Amino Acid Sequence |
>endoribonuclease
MPIKRLHTEVRYSDIVINQGTVYLSGQLADDLAGDIRQQTRETLAHIDRLLAEAGTDRSHLLSALIHLRDLADYAGMNEIWDSWLPSGAAPARTTVQAMM YAPQVRVEITVVAALPER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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