Pseudomonas sp. 20_BN, BN1079_RS13285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGTGGTTGAGCGTGCGGCTGTAGGCCATGTCACCGCTGACTGTCACGTGCAGATCGTGGGTTTCGAAGAAGCCATCGCCCTGGCAAAACTCGAAACAGC GCTGCCAGTGGGCCCGGTATTCGTCTCGCCCTTTGAACTGCAGGGCGCCGACCGCATCGAAAGCCACCAGATCATCGGCGTACTGATTCATGATCTGGTC CAGATCCTTGGCCTTGGTATCGCGCTCGAAGGCGTCGTGAAGTTCGCGAATTCGTTGTTCGTCGTGTGTCATGTCCATCTCCGCTCTGGTGATTGGGGGC ATGAACTGGTCGAACAGCGGGAGCACGGATCGACAGCCGTGGAAAATTTTTTATGCGCTCCAGCGAAAGGACTGCGCACTGATTGATGCTGAATACTGTT GCGAATTATTATCACTCCACTATTCTCTTTGCTCTGATGCCATGCCGTTCAGTCTCAACGGCATGCCCCTGCTCAGACCACCAGCCCAATCAGGCCCACC
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| DNA Sequence for Gene |
>BN1079_RS13285
ATGACCATCCTTCGCCTCCCTCGTAAAACAGGTGCTGTCTCCGTCCTGCTGCCCGCCTGCCTTGTCGCTGGCTTCGCCGGCACCCCGGCCTTGGCGCAGC AACCAGTCGATAACCAGCAAGAACAGACCAGTCAATCTGGCGAGCCGCTCGAACTGCCGACCACCGAGGTAGTCGCCAGCGCCGATGCCTCGGCCGGCGG GCTGACCGAACCCTATGTTGGCGAGCAGGTGGCGCGTGGTGGCCGGGTCGGCATCCTTGGCAACCAGGACTATATGGATACGCCGTTCACCTCCACGGCC TATACCTCGCAGCTGATCCAGGATCAGCAGGCACGCAGCGTCTCCGATGTGCTGCAGAACGACCCCTCGGTGCGCGTGGCCCGCGGCTTCGGAAATTTCC AGGAGCTGTATGTGGTGCGCGGCTTTCCGGTGTTCTCCGACGATATTTCCTATAACGGCCTTTACGGCCTGCTGCCGCGCCAGTACGTAGCCTCGGAGTT TATCGAGCGGGTCGAAGTGTTCCGCGGCGCCAACACCTTCCTCAATGGCGCAGCACCAGGCGGCAGCGGCATAGGCGGGGCGATCAATATCCTGCCCAAG CGCGCGCCCAACGAGCCGCTGAGTCGCCTGAGCCTAGGCGCCGAGGACGGCGGCCAAGGCATGGTCGCCGCCGATATAGCCCGTCGCTTCGGTGAGGAAC AGCGCTTCGGGATGCGCCTGAACGCCGCCAAGCGCGACGGCGACACCAACGTCGACGATGAAAAACGCACCCTCGACATGTTCGGCCTGGGCCTGGACTA CCAGGGAGACAACTTCCGCATCTCCGCCGACATCGGCCATCAGTACCACTACCTCGACCAGCCCAGGCCCAGCGTTTACCTTCGCTTCGTCGACCCGATC ATTCCCAGCACACCGGACGCAGAAGACAGCTTCGCCCAACCCTGGACCTACTCGAAGGAGAAGCAGACCTTTGGCACCTTCCGCGCCGAATACGATTTCT CCGACTCGGTCACCGGCTGGCTGGCCGCCGGCGTACGCGAAGGTGAGGAGGACAATCGCCTGGCCGTGCCGACCTACAACGGCGCCGGCCAGACCAGCAC CTCGATGTTCGAGAACGTCCGGGAGGATGATGTCTGGACCGCTGAATTCGGCCTGCGCGGCCGCTTTCAAACCGGAGCAGTCAGCCATCAATGGGTGACC TCGGCAGCCATCTTCAATTCAGAGGAGCGCAACGCCTACGCCACCTCGGCAGCGTTCGCCGGCAATCTCTACACTCCCATCGACGTAGAGCGCCCGCCTT ATGCAGCAGACGGAAGTGGCGGCTCATTGTCCGACCCAGGCCTCATCAATCGCACCCGGACCCAGAGCCTCGCCATCGCCGACACTCTGGGCTTTATGGA TGATCGCTTGCTGGTCACCCTGGGCATGCGTCGTCAAGGCTTCGACGTTCGTGGCTACGATTACAACAGCAGCGACCGCACCTCTTCGTACAAGCGCTAC GAGAACACCCCGGTGGCCGGCGTGGTGTATCGCCTGACCGACGAGGTCTCGCTCTACGCCAACTACATCGAAGGCCTGGTCAAGGGCGACATTGCTCCGG CGCAAAGCGGGACCACACCGATCGTCAACGCAGGCGAGGTACTGTCGCCCTACGTGGCCGAGCAGATCGAAGCCGGCATCAAGTACGACGGCGGAGTCGT CGGCGGCAGCCTGGCCGTGTTCACCACCGACAGGCCGTTCAGCACCGTCGAGAACGGCGTGTTCGGCGAAGGTGGCGAGCAGCGTAACCGCGGTATCGAG CTGTCGGTATTCGGCGAGCCGCTATACGGCGTGCGGCTACTGGGCGGCGTGACGCTGCTCGATGCCGAGCTGACCAAGACCCAGGACGGCCTCGACGAAG GCAATCGCGCCATTGGTGTACCCCGCACCCAGGCAAACCTTGGCGGCGAGTGGGATATACCTGGTATCGACGGACTGACCCTAACCAGCCGCGTCATCTA CACCAGCAGCCAGTACGCTGCCTTGGACAATAACGTGGAAATACCCTCCTGGACGCGCCTGGATCTGGGCGCACGCTACCGCATGGTGATCGACGACCAC GACGTGACCATCCGCGCACGCCTCGACAACGCAACAGGCCGAGACTACTGGGCCTCGACCGGTGGCTACCCAGGCCAGAACTACCTCGTCCTCGGCGCCC CTCGCACGCTATCCCTCAGCGCCACGGTCGATTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCAGGCAAGCACGCTTCGCAGCTGGAGCTGGATCCACAAGTGGTCCAGCCTCGTCTGCACCCTCTTCATCCTGATGCTGTGCCTGACCGGCCTGCCGCT GATCTTCTCCCACGAGATCGAGCACCTGACCGGCAGCGAGATCGAGGCGCCGCCAATGCCGGAGGGCACGCCTCATATCTCCGTGGATCAAGTGGCGGCC GAAGCGGTGCGTGCCTACCCGGGTTTGGTGCCGCTGTACTTCTTCGCCGAAGAGGACGCACCGGATCTCTGGTACGTAAAGCTCGACACCCGCGTCGACA CCGACGAAAGCGAGTCGCTGCTGATTCTCTCCGACGCGCGTACCGCAGCAGTGGTGGGCGTGCCGGATTTCGACGAAGGCTTTATGAGCGTGATGTACCG CCTGCACGTGGATCTTTATGCAGGGCTCGCGGGCAAGCTGTTCCTGGGTTTCATGGGGTTGCTGCTGATTGTCGCCATCGTATCCGGCGTGGTGCTCTAC
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| Amino Acid Sequence |
>TonB-dependent receptor
MTILRLPRKTGAVSVLLPACLVAGFAGTPALAQQPVDNQQEQTSQSGEPLELPTTEVVASADASAGGLTEPYVGEQVARGGRVGILGNQDYMDTPFTSTA YTSQLIQDQQARSVSDVLQNDPSVRVARGFGNFQELYVVRGFPVFSDDISYNGLYGLLPRQYVASEFIERVEVFRGANTFLNGAAPGGSGIGGAINILPK RAPNEPLSRLSLGAEDGGQGMVAADIARRFGEEQRFGMRLNAAKRDGDTNVDDEKRTLDMFGLGLDYQGDNFRISADIGHQYHYLDQPRPSVYLRFVDPI IPSTPDAEDSFAQPWTYSKEKQTFGTFRAEYDFSDSVTGWLAAGVREGEEDNRLAVPTYNGAGQTSTSMFENVREDDVWTAEFGLRGRFQTGAVSHQWVT SAAIFNSEERNAYATSAAFAGNLYTPIDVERPPYAADGSGGSLSDPGLINRTRTQSLAIADTLGFMDDRLLVTLGMRRQGFDVRGYDYNSSDRTSSYKRY ENTPVAGVVYRLTDEVSLYANYIEGLVKGDIAPAQSGTTPIVNAGEVLSPYVAEQIEAGIKYDGGVVGGSLAVFTTDRPFSTVENGVFGEGGEQRNRGIE LSVFGEPLYGVRLLGGVTLLDAELTKTQDGLDEGNRAIGVPRTQANLGGEWDIPGIDGLTLTSRVIYTSSQYAALDNNVEIPSWTRLDLGARYRMVIDDH DVTIRARLDNATGRDYWASTGGYPGQNYLVLGAPRTLSLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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