Pseudomonas sp. 20_BN, BN1079_RS03210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCGCTCCGTAGTAGGAGTTGCCTTGCTCAGGTTTCAGAAATCAACGGTGGTAGTCATGAATAATAAAACTCTATTGCGTGCTTTCTTCGCTGCCGGCC TGCTCGGCGCCGCCGGCTTTGCGATGGCACACGGCGACGTAACACCACAGAAAGTGGAAACCAAGGGGCTGGCTCCGTTGGGCGAAGAATGGCTGGATGA AAACCCCTATCGTGAACCGAGCGAGTTCCACGAGCGGGCGATCGAGATTGGATCGTCGGCCTACAACCAGAACTGCGCCCGTTGCCACGGCCTGGAAGCC ATTTCTGGAGGCATCGCGCCTGATCTGCGCGAGCTAGAGGCTAGTGTTGACGGCGACGATTGGTACAAAGAGCGTGTAATCAATGGCGCGGTGCGCGACG GCGCGGTGTATATGCCACGCATGGCCGACTACCTCAGCCAGGAAGCACTCTGGGCAATCCGTACCTATATCGAAAGTGAGGCCGCCAAGCAGTGATCACC
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| DNA Sequence for Gene |
>BN1079_RS03210
ATGCGCCGGCTGCTGGCGAGCCTTTGTCTGCTGATGTATTGCGCCTTGGCCCAGGCACAGGTGCCGCACGTGGCGAAGGTGCGCGAGTTCGACGACATCA TCGCCTCGGGCGTGCTAAAGGTCGCGCTGTACCGGGATTTCCCCCCGTACAGTTTCATGGTCGACGGCGAGGCGCGCGGGGTGGATGTCGAGCTGGCGCA GCAACTGGCGGACGGGCTCGGGCTTAAGGTCGAGGTGCTGTGGGTTACGCCCGATGAGACGCTGGACGATGACCTGCGCAACTTCATCTGGCGTGGCCAT TACCTGCGGCCCGGCATCGTCGCCGACGTCATGCTGCGGGTGCCCTATGACCGCGAATTCTCTTACAAGCAGAACGAGCTGGGCGAGCTGATCAACGAGC TGGTGGTGATGTTTGGCCCCTATCAGCGTGAGCGCTGGCAGTCGGCATATGACCATCGCCGTTTGGAAGAGGTAAGCAGCGTCGCGGTGTTCCAGTACCA TCCGGTCGGGGTGGAGGTGGAAAGCGTACCTTCGTTCTATCTGGCTTCGGTTCTCAACGGCAACATCCGAAAGATGCTGCACCACTACCCAACCACTCGC GATGCCTTTGCCGCCATGCAGGCCGGCGAGGTGGACGCGACCATGGGCATGCGGGGCGAGATCGACTGGCTGATGAGCCAGGCCAACGACCGCAACCTGC ATCTGGCCGACAACGCCTACCCAAATATGGGGCGGCAGGTGTGGGACTTGGGCATGGCCGTGCATGAGTCCAACCGGCAGCTGGCCTATGCCATCGAAGG CGTGCTGGAGGGAATGCTCACCGACGGCAGCCTGGAGCGGATCTATGCCAGCTACGGTATGCGCTACGAGTTGCCAGGGCTGTATCAGACCGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGTGGAGATAAAGTCCTTTGGCGGCGGTCGTATGGATTCGACCGCCGCTGACCGTTAGTCTGGGGCGCTTTTTTTCGACCTCCATTCTTCAGGGACTGA CCCATGAGCATCGCCCCCAACGCAGGACGCCTGCCAGACGAACATTCGCTGACCCACATTCCGCGCCTGGTTTCGCGCTACTACAGCGAACGTCCCGACC CTTCCGACCCGGCACAACAGGTCTCCTTCGGCACTTCAGGTCATCGTGGTTCGTCGCTGAAGAACAGCTTCAACGAGTGGCACATCCTCGCGGTAACCCA GGCGATCTGCGATTACCGACGCGAGCAGGGCATCAACGGGCCGGTGTTCGTCGGCATGGATACCCACGCGCTGTCCGAGCCGGCATTCGTTTCGGCCCTG GAAGTGCTGGCCGCCAACGGCATCGAAACTCGCATTGACTCAGGATGCAGTGAAACCGACGGCGCCCCCGGCTATACGCCGACGCCAGCGATTTCCAACG
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| Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MRRLLASLCLLMYCALAQAQVPHVAKVREFDDIIASGVLKVALYRDFPPYSFMVDGEARGVDVELAQQLADGLGLKVEVLWVTPDETLDDDLRNFIWRGH YLRPGIVADVMLRVPYDREFSYKQNELGELINELVVMFGPYQRERWQSAYDHRRLEEVSSVAVFQYHPVGVEVESVPSFYLASVLNGNIRKMLHHYPTTR DAFAAMQAGEVDATMGMRGEIDWLMSQANDRNLHLADNAYPNMGRQVWDLGMAVHESNRQLAYAIEGVLEGMLTDGSLERIYASYGMRYELPGLYQTE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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