Pseudomonas sp. 20_BN, BN1079_RS01265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006281 | DNA repair |
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR00426 | JCVI: competence protein ComEA helix-hairpin-helix repeat region | IPR004509 | Competence protein ComEA, helix-hairpin-helix domain | 38 | 100 | 9.0E-23 |
| Gene3D | G3DSA:1.10.150.280 | - | - | - | 31 | 101 | 5.1E-22 |
| PANTHER | PTHR21180 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 | - | - | 36 | 99 | 6.5E-18 |
| Pfam | PF12836 | Helix-hairpin-helix motif | - | - | 38 | 99 | 1.3E-21 |
| SUPERFAMILY | SSF47781 | RuvA domain 2-like | IPR010994 | RuvA domain 2-like | 25 | 99 | 8.56E-27 |
| SMART | SM00278 | HhH1_4 | IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | 49 | 68 | 3.2 |
| SMART | SM00278 | HhH1_4 | IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | 79 | 98 | 160.0 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.