Pseudomonas sp. 20_BN, BN1079_RS00790 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 20_BN genome assembly PRJEB6478_assembly_1,contig CONTIG000001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACATCGATGTACTGATCATCGACACCGCTGCCGGGATCGGCGACGGCGTGGTGAGCTTTGTCCGTGCCGCCCAGGAAGTGCTGTTGGTGGTAACGGATG AGCCGACCTCCATCACCGATGCCTACGCCCTGATCAAACTGCTTAATCGCGACTATGGCATCAGCCGCTTCCGCGTGCTGGCCAACATGGCGCATACCCC GCAGGAAGGACGCAACCTGTTTGCCAAGCTGGCCAAGGTTACCGAGCGCTTCCTCGATGTGGCATTGCAGTATGTGGGAGCGGTGCCCTACGACGAATCT GTGCGCAAGGCCGTCCAGAAACAGCGTGCCGTATACGAAGCGTACCCGCGGGCCAAGTCCTCGCTGGCGTTCAAGGCCATCGCTCAGAAGGTGGATACCT GGCCGCTGCCGGCAACCCCGCGCGGCCATCTGGAGTTCTTTGTGGAGCGCCTTATCAGGCCTGCCGCAGACACTCACGAATGACAGTGGCTGGATTGGGT
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| DNA Sequence for Gene |
>BN1079_RS00790
|fliA
ATGTATTACAGCAAGGCTCAGGCAAAAGACTCTCAGTACCAGCTCATCGACCAGTACGCACCCTTGGTCAAGCGCATCGCCTACCACCTGCTGGCGCGCT TGCCGGCCAGTGTGCAGGTCGATGATCTGCTGCAGGCGGGCATGATCGGGCTGCTCGAGGCATCGAAGAAATACGACGCCGGAAAAGGCGCCAGCTTCGA GACCTACGCCGGTATTCGTATTCGTGGTGCCATGCTTGATGAGGTGCGCAAAGGAGACTGGGCGCCGCGCTCGGTACACCGCAATTCGCGCATGGTCAGC GAGGCGATCCGGGCCATCGAGGCGAAAACCGGCCGCGACGCTAAAGATCATGAGGTTGCGGCCGAACTTGAATTGAGTCTGGACGAGTACTACGGCATTC TGGGCGACACTCTGGGCAGCCGTTTGTTCAGTTTTGACGATCTGCTTCAAGAGGGTGAACACGGAGAGTTTGGCGAGGATGCCGCCAGCGCACATCCCGA GCCGTTCCGTGATCTCGAAGACGAGCGTTTTCAGCAGGCCCTGGCGGAGGCCATCAGCAACCTGCCGGAACGTGAAAAGCTGGTGCTTTCGCTGTACTAC GACGAAGAGCTGAACTTGAAGGAAATCGGCCAGGTTCTGGGCGTCAGTGAATCGCGGGTGAGTCAGCTGCATAGCCAGTGTGCGGCACGTCTGCGTGCTC GCCTGGGAGAGTGGCGCGCGCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCGACTGCGAAAATTACTCGAGGCGGCTTTTACAGGGCGCTTCTGATAGGTGGGGCAGTCAACGCAAGGAAGCAACAGTCGAGAAACGCAGCGCATCA GGCGCCGTTTACGAGTTGTAGATGAGCTTTTGATCGGGCTCGCGCACGAGCTTGTTTTTTTAACGCAGCGATGACGACGCAGGTAGTTTACAGACGTCCT ACAGGCTTTATCGATGAAGCCCGCCGCAAGCCATGAGCAGGGCTAGGGATTTCGAGATTTACGGAGGTTTACTTGGACAAGAATATGAAAATCCTCATCG TTGACGACTTCTCGACGATGAGACGGATCATCAAGAACCTCTTGCGCGATCTGGGCTTCACCAACACTGCCGAAGCAGACGACGGTACCACCGCGTTGCC GATGCTCAAGAGCGGCAGTTTCGATTTCCTCGTGACCGACTGGAACATGCCCGGTATGAGCGGCATCGACCTGTTGCGCCATGTGCGCGCCGATGAACGC
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| Amino Acid Sequence |
>flagellar biosynthesis sigma factor
MYYSKAQAKDSQYQLIDQYAPLVKRIAYHLLARLPASVQVDDLLQAGMIGLLEASKKYDAGKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNSRMVS EAIRAIEAKTGRDAKDHEVAAELELSLDEYYGILGDTLGSRLFSFDDLLQEGEHGEFGEDAASAHPEPFRDLEDERFQQALAEAISNLPEREKLVLSLYY DEELNLKEIGQVLGVSESRVSQLHSQCAARLRARLGEWRAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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