Pseudomonas sp. 12M76_air, VG99_RS12125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 12M76_air. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTGGTGCCATCGGGCATCAGGCCCTTGCCCTGGGTCTCGCGGACGGCGCTGCACAGGTTGGTCTTGCCGGATTTGCAGAATTTGCACTCGCGGCATTC GGCGGTATACAGCGGGATCACGTGATCGCCGACGGCCAGGGAGGTCACGCCCTCGCCCACCGCCTCGACAATACCACCGCCCTCGTGACCGAGAATCGCC GGGAATACCCCTTCCGGATCATCCCCCGACAGGGTAAAGGCGTCGGTATGGCAGACGCCGGTAGCGACGATGCGCACCAGCACCTCGCCGGCCTTCGGCG GCGCCACGTCCACTTCGACGATCTCCAGGGGTTTGCCTGCTTCGAACGCCACAGCGGCGCGGGACTTGATCATGGGGGACCCTCCGTTCAGATGATTGGC AATAACAGCTGCCAGTGTAGTAAATCATCCAGTCGTGGATAATAGGCCGCCAGACAAAACATTATTGCCACACAGGGATAATCATGCGAGACCACACCTC
|
|
| DNA Sequence for Gene |
>VG99_RS12125
ATGAGCCGCTGGAGCGGTCTGGATGAATTCGTCGCCGTGGCGGAGCTGGGCCATTTCAGCGGCGCGGCCCGCCGGCTCGGCGTTTCCTCCTCCCATATTA GCCGCCAGATCGCCCGGCTCGAAGATCGCCTGCAGACGCGGCTGTTCTACCGCAGCACCCGCCGCGTCACCCTGACCGAAGCGGGCCAGACCTTCCTGCA ACACTGCCAGCGGCTGCAGGACGCGCGGGATGAAGCGTTGCAGGCGGTCACCGACCTGTCCAGCGAACCCAAGGGATTGCTGCGCATGACCTGTTCCGTA GCCTACGGCGAAGAGTTCATCATGCCGCTGGTCAACGACTTCATGGCCCTGCATCCGCAGCTGCGCATCGAGATGGCGCTGACCAACCAGACCCTGGATC TGCTGCACGGGCAGTTCGACCTGGCCATCCGGCTGGGGCGGCTGCAGGATTCCCGGCTGGTTGCCACCCGGCTCGCGCCACGGCGCATGTACCTGTGCGC CGCCCCCGCCTACCTCGCCCACCACGGCGCGCCCCACAGCCTGTCCGAGTTGCCCCGGCACAACTGCCTGATCGGCAGCAGCGATACCTGGACCTTTCTC GAGTCAGGCCGGGAAGTGCCGGTGCGGATCCAGGGCAACTGGCGCTGCAATAGCGGCCGCACGGTGCTGGATGCAGCGCTGCGGGGGTTCGGCCTGTGCC AACTGCCGGACTACTACGTGCAGGAGCACCTGCGCAGCGGCGCGCTGCGCTCACTGCTCAACCAACACCAGCCACCCCACACCGCGGTCTGGGCGCTGTA CCCCCAGCAGCGACACCTGTCACCGAAGGTGCGCAAGCTGGTCGAGCACTTGAAGAACGGCCTGCAGCAGCGGCTTGAATATCAGCAGCTGGATGCCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CAGACACAAAAAAGGGAGCCCGAAGGCTCCCCTTTGTCGCACCCGTGCCGTTATTTCAGGCTTTCGGCGCGCTGCTGCAGTTCGGGATCGGTCTGCATGC GGGTGGCGATCTCGTTATAGGTCGGGACATCCAGATCGGCGTCCTGTACCGCTTCAACCATTTTCTCCTGGGCTTCAAGCTGGAGCTTCTGGGCTTCTTC CTGATCTTCTGCCTTGCTCAGTTTTTCCGAGAACTCGTCACGCAGCTCGGCTACTTCCTTATCCGCCTCGACAAATTTCTCCAGATTCTCTTCGCTGATC GGCGCGGCGGCAGGCTGGCCCTGCTGGTGCTGTTGCTGAGCAGGAGCGCCTCCGGCCTGGGCCATGACAGCGGGTGCGCCCATCCCGAAGGTGGCGAAAG CGATGGCGGCGGTCAGTGTTTTAAGCGTGTTCATGAGGTGCTTCTCCTTCAGTTGAAAGTAACCAGACCTATCCATGAACCGTGCCAGTTTTTGATAAAA
|
|
| Amino Acid Sequence |
>LysR family transcriptional regulator
MSRWSGLDEFVAVAELGHFSGAARRLGVSSSHISRQIARLEDRLQTRLFYRSTRRVTLTEAGQTFLQHCQRLQDARDEALQAVTDLSSEPKGLLRMTCSV AYGEEFIMPLVNDFMALHPQLRIEMALTNQTLDLLHGQFDLAIRLGRLQDSRLVATRLAPRRMYLCAAPAYLAHHGAPHSLSELPRHNCLIGSSDTWTFL ESGREVPVRIQGNWRCNSGRTVLDAALRGFGLCQLPDYYVQEHLRSGALRSLLNQHQPPHTAVWALYPQQRHLSPKVRKLVEHLKNGLQQRLEYQQLDA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|