Pseudomonas sp. 12M76_air, VG99_RS10730

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 217 478 5.4E-77
CDD cd06225 HAMP - - 152 194 1.43271E-7
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 130 478 1.4E-100
Pfam PF00672 HAMP domain IPR003660 HAMP domain 147 196 7.8E-10
Gene3D G3DSA:1.10.287.950 - - - 149 479 1.4E-73
CDD cd11386 MCP_signal - - 244 443 8.2902E-56
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 170 479 5.89E-76
SMART SM00304 HAMP_11 IPR003660 HAMP domain 310 370 48.0
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 271 446 6.6E-45
SMART SM00304 HAMP_11 IPR003660 HAMP domain 149 202 9.6E-7
Coils Coil Coil - - 351 371 -
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 149 479 6.7E-93

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.