Pseudomonas sp. 12M76_air, VG99_RS09755
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 12M76_air. [Details] | |
| DNA Sequence Upstream of Gene |
AGATGCTGATGATGTATGTCAGGAAGTAATGCTCAAGGTGCTGCATGGGCTCAAGCACTTTGAAGGCAAGGCCAAGTTCAAGACATGGCTATATAGCATT ACTTACAATGAATGCATCACCCAGTATCGAAAAGAAAAGCGGAAGCGGCGGTTATACGACGCGCTCAGTCTGGATACTCAGGAAGAAGCCCAAGAACCTG AGAGCCCGGCTGTAGACAGCAAGGGCCTTGACCATTGGCTTGTGCATGTCAACCAGGTGGATCGGGAAATCCTGGTATTGCGCTTCGTGGCGGAACTCGA GTTTCAAGAGATATCCGACATCATGAATATGGGATTAAGTGCCACCAAGATGCGCTACAAGCGGGCACTGGAGAGGTTGCGCAAGCATATTAATAATCCT TTTTAGATGCCACTGCCTTGAAAATCTGGAGCTTCTGCTATACTGCTTGCGAGTTTTGCGCAAAACCTAACGTCCGAATGGATTTAACGGGGATTCAAAG
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| DNA Sequence for Gene |
>VG99_RS09755
ATGAAATTGAAAAACACAGTAGGTATCGTTGTAAGTGCTGCCATCGCCGGCTCCGCGCTGCCGGTCATGGCCCAGAGTGCCGGTTCGGTTGAAGTCGAAG CCTTTGCCAAGCGCTATTTCACCGATAGCCGCCACAATCTGGACGACGGTACTCTGGTTGGTGGCAGCCTCGGCTACTTCGTCACCGACGATGTACTGTT GAACATCGGCTTGGGTACTTATAAGAGTCTGGAAGTCGACAACGGCCCGAACTCTGGCGAAGATATCGATGGCAAGCTGGCCCACGTTGAAGCCGTTTAC CACTTCGGCGAAGGTGCGCTGCGTCCTTACGTTTCCGGTGGTTTCGCTCACCAGGAACTGGAACAGATCGGCACCAACCAGGATGACCGCACCACCATGG CTGTGGCTGGTTTCGGTGTGAAGAACTACCTGAACGAGAACTTCTTCGTGAAGGCTGGTGTTGACGCCCTGTACGGTCTGGACCATGGCAACACCGAATG GCAGGCTGGCGTAGGTGTTGGTCTGAACTTCGGCGGCCGCGCCGCTCCGGTTGTAGCCCAGGCTGAACCTGCTCCCGCTCCGGCACCGGCTCCTGAGCCC GAGCCAGAAATGCAGTCCGTTCGCGTTGAGCTGGACGTCAAGTTCGACTTCGACCGCGACACCATTCGCCCTGAGTTCCGTCAAGACATCCAGAGCCTGG CCGAGTTCATGAAGACCTACCCGTCGGTAACCACTACCGTTGAAGGTCACACTGACTCCGTAGGTAGCGATGCCTATAACCAGAACCTGTCCGAGCGTCG TGCAAACTCCGTTCGTGAAGCTCTGATCGCTGAAGGTGTTGAGTCCTCCCGCGTGAACGCTGTTGGCCACGGCGAAGCTCGTCCGATTGCTGACAACAGC ACCGACGACGGCCGCGCCATGAACCGTCGCGTTGAAGCAGAAGTTGAAACCGAGGTTGAAGTTCGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGATCTTCACCTTAAAGATCCCGCGGCGTCGTAATTGCGGCAACTCGGAATCAGCCTGCCAGGGAAGGCAGGCACAAAAAAGCCGGTTTAGGACCGGCT TTTTTGTGCCCGCGTTTTACTGCGGCTCATTCTTGCGCCTGGTTCACTCCCGGAAAACGCAGCCGGAAGTCCTCTGGCATCGGTGCCACCTTGGCAGAGT GGAAGTGGTAGAAGACGAAGCCGGACTTGGCCAGGGCGACCAGGTCGCCATTGTCGGCCTTGGTAATGCGGAAGATGATATCGCCCCCGTACTTGTTCAG GTCCATCAGGCCCACTTCGAATACCAGTGTCTCGCGCGCGAAAGCTTCCTTGAGATAGGTAGTCGCCAAGTCGGTCACGATGATGCCGACGTCACTGACG CCAGCTTCCTCGATCCCGAACTGATAAAGAAAGCGCGCCCGCGCCTCCGAAATCATCGAGACCATGGAGTCGTTGGCCAGGTGCTTGCCTGAGTTGATAT
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| Amino Acid Sequence |
>porin
MKLKNTVGIVVSAAIAGSALPVMAQSAGSVEVEAFAKRYFTDSRHNLDDGTLVGGSLGYFVTDDVLLNIGLGTYKSLEVDNGPNSGEDIDGKLAHVEAVY HFGEGALRPYVSGGFAHQELEQIGTNQDDRTTMAVAGFGVKNYLNENFFVKAGVDALYGLDHGNTEWQAGVGVGLNFGGRAAPVVAQAEPAPAPAPAPEP EPEMQSVRVELDVKFDFDRDTIRPEFRQDIQSLAEFMKTYPSVTTTVEGHTDSVGSDAYNQNLSERRANSVREALIAEGVESSRVNAVGHGEARPIADNS TDDGRAMNRRVEAEVETEVEVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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