Pseudomonas sp. 12M76_air, VG99_RS09010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00088
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50341
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004673 protein histidine kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000155 phosphorelay sensor kinase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM01231
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016310 phosphorylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00344
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 882 1012 2.1E-21
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 886 983 8.5E-8
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 890 982 2.6E-12
SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1619 1800 4.58E-33
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1174 1272 5.18695E-13
Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IPR003594 Histidine kinase/HSP90-like ATPase 1666 1802 3.5E-15
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1176 1260 4.4E-12
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1787 1800 6.8E-10
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 7 130 2.22E-20
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 605 728 5.89E-25
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1329 1433 4.9E-8
Gene3D G3DSA:3.30.565.10 - IPR036890 Histidine kinase/HSP90-like ATPase superfamily 1616 1802 3.5E-51
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1174 1295 2.75E-23
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1763 1781 6.8E-10
PANTHER PTHR43395 SENSOR HISTIDINE KINASE CHEA - - 607 853 0.0
Pfam PF01584 CheW-like domain IPR002545 CheW-like domain 1808 1940 8.3E-21
SMART SM00260 chew_2 IPR002545 CheW-like domain 1795 1939 5.6E-31
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 605 732 2.6E-24
PRINTS PR00344 Bacterial sensor protein C-terminal signature IPR004358 Signal transduction histidine kinase-related protein, C-terminal 1707 1721 6.8E-10
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 1967 2080 2.0E-36
SMART SM00387 HKATPase_4 IPR003594 Histidine kinase/HSP90-like ATPase 1662 1803 2.7E-20
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1330 1426 1.31E-10
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1330 1420 6.1E-6
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 1967 2085 4.41E-36
SMART SM01231 H_kinase_dim_2 IPR004105 Histidine kinase CheA-like, homodimeric domain 1479 1617 1.2E-11
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 11 114 2.1E-9
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 10 95 8.5E-6
Gene3D G3DSA:3.40.50.2300 - - - 1966 2087 7.8E-39
Pfam PF01627 Hpt domain IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 607 697 1.6E-10
Coils Coil Coil - - 231 258 -
CDD cd16916 HATPase_CheA-like - - 1625 1800 2.19473E-76
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 439 563 1.08E-11
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 611 698 1.04734E-4
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 1027 1138 6.62E-9
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1173 1303 6.6E-25
CDD cd00088 HPT IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 890 984 6.30319E-8
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 605 702 0.0046
CDD cd17546 REC_hyHK_CKI1_RcsC-like - - 1969 2080 1.16724E-30
SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain IPR036641 HPT domain superfamily 887 1008 1.09E-19
MobiDBLite mobidb-lite consensus disorder prediction - - 752 774 -
Gene3D G3DSA:2.30.30.40 SH3 Domains - - 1877 1939 3.7E-19
MobiDBLite mobidb-lite consensus disorder prediction - - 759 774 -
FunFam G3DSA:3.30.565.10:FF:000016 Chemotaxis protein CheA, putative - - 1618 1802 9.2E-62
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 1969 2080 1.3E-25
SMART SM00073 hpt_2 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain 1174 1271 4.1E-4
SUPERFAMILY SSF50341 CheW-like IPR036061 CheW-like domain superfamily 1802 1938 1.03E-22
Coils Coil Coil - - 1510 1537 -
Gene3D G3DSA:1.20.120.160 HPT domain IPR036641 HPT domain superfamily 1019 1143 6.9E-8

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.