Pseudomonas sp. 12M76_air, VG99_RS02765
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 12M76_air. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGACGCCAAGGGCGCCGTAATCACTCTGGGTGACGACATCGAAGGCACCCTGAAGGCCTCCGAAATCAGCCGCGACCGCGTTGAAGATGCGCGCAACG TGCTGAACGTCGGTGACGAAGTCGAAGCCAAGATCATCAGCGTTGACCGCAAGAGCCGTGTCATCAGCCTGTCGATCAAGGCCAAGGACGTTGAAGACGA GAAAGAAGCCATCCAGGACCTGCGCAAGCAGGAAATGCTGGCTGCCGGTCCGACCACCATTGGTGATCTGATCAAGCAACAGATGGAAAACAAGGGCAAC TGATTGCCAGTGTGATCCATTGAAAAAGGGCGACTTCGGTCGCCCTTTTTTGTGCCCGCCGTTCCGCAGGTCCGCTCACCGGACCGCTCCCCGAAGCATA CCTTTTCCGCACCGCGCCATATCAGGCTGTTCAAATTCCGTCAAGCATGGTACAACAAATCAAAACGGATCCTAGCCGCTTGAATAAAAAGGGAAAAATC
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| DNA Sequence for Gene |
>VG99_RS02765
ATGACCAAGTCGGAGTTGATCGAACGCATAGTCGAACAACAGGGCCAGTTATCAGCCAAGGATGTGGAGCTGGCTATCAAGACAATGCTGGAGCATATGT CGACTGCACTGGCCACTGGCGAGCGCATCGAGATTCGCGGTTTCGGCAGTTTTTCACTGCACTATCGCGCGCCGCGGATCGGCCGTAATCCCAAGACCGG GGAATCGGTGCACCTGGAGGGCAAGTATGTGCCCCATTTCAAACCGGGCAAAGAGCTGCGTGACCGAGTCAATGACTCGCTGGAAACCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GATCGAGTATGACTGAGCGCAGGCCTGCGCTATACTGGCTCCCGGCATAGGAAATGGGAGTGGCGGCATGCAATGGCTGAAACGCGCGGTGCTGATCATC GTACTGTTGTTGGTCGCATTGGCAACGATAGATTTCATGCTGGAGAACCAGCAGCATGTCGCGTTGCAGTTCCTCGAAATTTCTTCCCCCGAACTTCCGG TATCCCTCTTCGTCGTCATCGCCTTCGTTCTCGGCAGCATGCTGGGCATCTTCATCGGTTGGTTGCTGACCACACGGCTGCGCTTGCGCCTGATGGTGCA GAGCAATGAGCTGAGCCGCTATCGCAAGGAAATAGACAAGCTGCGCACCCAGGCTGTAAAAGGCTGATCGGCATGCAGGAGTTGGTGTTCCTCGGCCTGT TCGTGGGAGCGCTCGGCATCGGCTGGTTCCTTGGCCGCCGCGAAGCCATCAAGGTCGGCGTGATGCTCGCGCCCCACGCCAGTGCCATCGACAAGCAGTA
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVEQQGQLSAKDVELAIKTMLEHMSTALATGERIEIRGFGSFSLHYRAPRIGRNPKTGESVHLEGKYVPHFKPGKELRDRVNDSLETA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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