Pseudomonas sp. 12M76_air, VG99_RS02240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 12M76_air. [Details] | |
| DNA Sequence Upstream of Gene |
GAGCGTTTCATCGAGGCCCATGAACCGCGGTTGTCCCAGGTCCGGGTCATCGCCCTGCCCCGGGATATCGACCCCCTGAGCCTGGCCTTCGCCATCGAGG CCAGGCTGGAGGTCGAGCAACTGAAATGCAATGTCAACTTTTCCGCCCGCCTGGATGGCAGCGGTCAAGTCCAGGTTGAATAGGAGTTCACCATGTCAGG AAGACCCGCCGCCCGTTTGGGCGACCCCACAGCCTGCCCCAAAACCGGCCACGGCACCAACCCCATCGCCGCCGGCTCGGCCGACGTGCTGATTGACGGT GTGCCGGCGGCACGTATGGGTGATGCCACTGCCTGCGGCGCCAGCCTAGTGGACGGGCTCAGCCCCACAGTGGTGATCAACGGCAAACCAGCCGCGACGC TCGGCAGCGCCGGCACCCATGGCAACGCCGTCACCGCGGGCTCGGCCACGGTGTTGATCGGCTGACGCCAACCCTTTACTCGACTACACAGGGATGCACA
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| DNA Sequence for Gene |
>VG99_RS02240
GTGTCGTTCAACCATTACTACCAAAGTGAACTGACCGCGTTGCGGCAGCTCGGCAAGCGCTTTGCCGAGCGCAGCCCGGCGCTGGCACCCTTTCTTGGGC AGAGCGGCAAGGACCCGGACGTTGAGCGCCTGCTTGAGGGCTTTGCGTTCCTCACTGGACGGCTGCGGCAGAAGCTCGACGACGAGCTGCCCGAGCTCAC CCATTCGCTGATGCATCTGCTGTGGCCGAACTATATGCGGCCGCTGCCGGCGATGAGCATTCTGCAGTTCGATCCGCTGCGCCACGCTGGCGATGCCCTG GTAGTGGCCCGCAATACGCCGGTGGAGTCACGGCCGGTAGACGGAGTGAGTTGCCGATTCCGCACCAATTTCGATACCGAGGTGCTGCCCCTGGCAATGC AGGCCGTGGATTATTCGGTCAAGGGCAATGGCGCCCTGCTCAATCTGCAACTGATGATGAGCGCTCCCGGCAACCTCGCGGATATCAAGCTCAAGCAACT GCGCCTGCATTTCGCTGGCGAGCGCTACATCAGCCAGATGCTGCTGCTGGGCCTGTCGCGCAATCTGCACAGCATCGAGCTCGTGCTGCTCGACCGGCAC GGTGCTGCGCTGGAGCTGCCCGGCGAGATAACGAAGGCCCTGCGGCTGGGCCCGGAGCAGGTGCAACAGGTAGGCTTCGCTGATGAGGAGGCGATGATCC CCTACCCCCTCAATACCTTCCGCGGCTATCGCTACATTCAGGAATATTTCGCCTTTCAGGACAAGTTCCTGTTCGTGGACATACTCGGTCTGAACGTAGT GCAACGCGCACCGGCGGAACTGTTGAAGCAGGCCAGGGGCCTGGAGCTGCGCTGTCATATTGCCAAGGCGGGGGAACAGCGTATCCGCCCGACGCTGGAC AATGTGCGGCTGTATTGCACCCCGATCGTCAACCTGTTCAGCCATGACGCTAGTCCGATCCGGCTCGACGGCCGCCAGGACCAGTATCTGCTGCGGCCAG CCACCTACGGCAATCGTCACTGCGGCGTGTTTTCCATCGACCGGGTGACCGGCTGGAAGCCGGGCGGCCAGGGCTACGAGGAATATGTCCCCTTCGAGTC CTTCGAACACGACACCAGCTTCGGCGCCGACACGGCTCGCCCCTACTACAGCTTGCGGCAGTACGCATCGCCGGTGGGCGACGGGCTGGAGACCTATCTC AGCTTCGGCCTGTACAGCCTGGAACATCACGAGACGCTGTCGGTGGAGCTGACCTGTACTAACCAGAACCTTCCGCAGAAACTGACCTTGGGTGATATCT GCCTACCCTGTGAAGGCACTCCGGAATTCCTGAATTTCCGCAATATCAGCGCGGTCACCCCCTGCCATGCGCCGCCTCTGCACCGGGATTTCCTGTGGAA GCTGATCAGCAACATGTCGCTCAACTACCTGTCACTGGCCAACGTCGAGGCGCTCAAGGTCATCCTGGAAACCTATGACCTGCCACGCCATACCGACCAG CATGCCGCCAAGGTCAGCAAGCGCCTGCTCGGCGGCCTCAAGCACATCAGCCATACGCACGTTGACCGGCTGCACCGCGGCTTGCCGGTACGGGGTATCC GCACCGAGCTGAGCATGGACGCCGATGGCTACCTGGGCGAGGGCGATCTGTTCCTGTTCGCCTCCGTGCTCAACGAATTTTTTGCACTTTACGCCAGCCT CAACTCCTTCCACGAGTTGCGGGTCAAGAGTTCCAAGGGAGAGACCTATCAATGGCCGCCACGCATGGGGCAACAGCCCCTGCTTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCCGATCGTGCGCAGCATTCGGGAATACAGCCTGTTCCAGGGCGTGCAACTGGTGCAGGAGCGCCTGCGCCAGGCCCATCCCGAACTGGACGATGAGGC GCTGTATGAGCGTCTGGAACTGCAGGCGAACCCGAGCATGGGCTTCCCGGGCAGTGAAATCGAGTCGGTGGAGTATTTTGAGGAGCGCGGTGAGCTGCGG GCGCGGCTGCGAGTGAACCTGATCAGCCTGTTCGGCGCCGGCTCGCCGTTGCCGGCCTTTTACGGTGAGCAGGCGCTCGGCGACAGCGCCGACGGCAATC CCACCCGCGAGTTCATGGACCTGTTCAACAACCGGCTGCAGCGGCTGCTGCTGCCGGTCTGGCAGAAATACCGCTACCACGCGCGTTTCAAACCGGGCGG CAGCGATGCGGTGTCGGCCTTGCTGTTCTCGCTGATCGGGCTCAGCGGCAGCATCATCCGACATTCCACCGAACTGAACTGGAAGCGGCTGCTGCCCTAT
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGKRFAERSPALAPFLGQSGKDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAMSILQFDPLRHAGDAL VVARNTPVESRPVDGVSCRFRTNFDTEVLPLAMQAVDYSVKGNGALLNLQLMMSAPGNLADIKLKQLRLHFAGERYISQMLLLGLSRNLHSIELVLLDRH GAALELPGEITKALRLGPEQVQQVGFADEEAMIPYPLNTFRGYRYIQEYFAFQDKFLFVDILGLNVVQRAPAELLKQARGLELRCHIAKAGEQRIRPTLD NVRLYCTPIVNLFSHDASPIRLDGRQDQYLLRPATYGNRHCGVFSIDRVTGWKPGGQGYEEYVPFESFEHDTSFGADTARPYYSLRQYASPVGDGLETYL SFGLYSLEHHETLSVELTCTNQNLPQKLTLGDICLPCEGTPEFLNFRNISAVTPCHAPPLHRDFLWKLISNMSLNYLSLANVEALKVILETYDLPRHTDQ HAAKVSKRLLGGLKHISHTHVDRLHRGLPVRGIRTELSMDADGYLGEGDLFLFASVLNEFFALYASLNSFHELRVKSSKGETYQWPPRMGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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