Pseudomonas sp. 12M76_air, VG99_RS02220

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 12M76_air. [Details]
DNA Sequence Upstream of Gene
ACACCGACACCCGTCACTGGCTCGGCACTCGAGTAATGGCTCCGGCGACAACCGTGACCGCTCCCGCTGCCGAGTCCTGCAGCGACGGGACGGCTCCCTG GCAACAGGCCCTGCAAGATGCGCTGACACTGCTGCGCCGGGACGGCTTGCCGCCCGCCATGCAATTGCTCGCGGAAGGTGCCCGGCAGAGCGAAAGCGAT CGGGCCCGCTTCCACTGGCAATTGGCGCAAGCCCAGCTGTGCTTCCGTGCCCGCCAGCACGAGGCGGCGTACGGCCGGCTGGATGCCCTGCTTCACCAGC TCCAGTCCGCCGGACTGGAACGCTGGGAACCCACCCTGAACCTGGAAGTACTGCGTCTGTTGTATGCCTGCTGTGAGTTGCTGCCGCAGAGCCAGCTTGT GCGTGATCGCAGGGAAGAGATCTTCCACCGGCTGTGCCACTTCGATCTGGAAGTGGTACTGAACAAGGCCCTCGGGCCATCAATGTAGCGGAGAACCACC
DNA Sequence for Gene
>VG99_RS02220
ATGGCCAAAGAAGGCACGGTAGCACCCAAAGAACGGATCAACGTCACCTTCACGCCGGACTCGAATGGCGCCTCGGAGGAAGTCGAACTGCCCTTGAAGT TGATGGTATTGGGCGATTTCACCCAGCGGGAAGACGAGCGCAAGATCGAGGATCGCAAGCCGATCGCCATCGACAAGAACACCTTCGACGAGGTGCTGGC CAAGCAGGAGCTGAACCTGAGCTTCCAGGTGCCCAACCGGCTGCAGGATGACCCGGCCCGGGAAGACCTGGCGGTCAACCTGCAGATCAACTCCATGAAG GATTTCAACCCTGCCAGCCTGGTCGAGCAAGTGCCCGAGCTGCGCAAGCTGATGGAACTGCGCGATGCGCTGGTGGCCCTGAAAGGCCCGCTGGGTAACG CACCGGCCTTCCGCAAGGCGATTGAAAGCGTGCTCAGCGATGACGACTCCCGCGAGCGCGTACTTGCCGAACTGGGCCTGGCCCAGCAACAACAACCGGA CGCCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCACAAGGAAGCACGCATGAGCACCCAGACAACCGCCATTGCCGCAGCCAGCGCCAGCGACGACATCAGTATCCTTGACCGCATCATCGCCGAAACCCGA CTGACGCCGGATGACGAAGCCTATGGCATCGCCCGCCGTGGCGTATCGGCTTTCATCGAGGAACTGCTCAAGCCGCAGAATGACAAGGAGCCGGTCAAGA AGGCCCTGGTCGACCGGATGATTGCCGAGATCGACGCCAAGCTCAGCCAGCAAATGGACGAAATCCTGCACCATCAGCGATTCCAGGCGCTGGAGTCCTC CTGGCGTGGGCTCAAGCTGCTGGTCGATCGCACGGATTTTCGCGAGAACATCAAGTTCGAGATGATCAATGCCTCCAAGCAGGATCTGCTCGACGATTTC GAAGACAGCCCGGAGATCGTCCAGTCCGGCCTCTACAAACATGTCTACACCGCCGAATATGGCCAGTTCGGCGGGCAGCCGGTCGGCGCGCTGATCGCCA
Amino Acid Sequence
>type VI secretion protein
MAKEGTVAPKERINVTFTPDSNGASEEVELPLKLMVLGDFTQREDERKIEDRKPIAIDKNTFDEVLAKQELNLSFQVPNRLQDDPAREDLAVNLQINSMK DFNPASLVEQVPELRKLMELRDALVALKGPLGNAPAFRKAIESVLSDDDSRERVLAELGLAQQQQPDA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site