Pseudomonas sp. 11/12A, GQ39_RS24285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTGCTCGACTAATCAGCTCTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGCAGCGCGTTGAAGGGCTTGGTCAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCGAAAGTAGCCT GGGAAAACGACAAGCCTACCGTCGTCGCCCTGCGTGAAATCGCTGAAGGCCTGATCGACTACGCAGCTATCGCCGAAGCCGAAATCGTTGAAGATGAACC GCTTTTTGCTGCATTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGAACACAGCTTGCGGCAGGAGTCATC
|
|
| DNA Sequence for Gene |
>GQ39_RS24285
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAAGGACCAGGTCAACCTGGTCCGCCGGGCGTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGCAGTGGCGAGGCGTACGTCACGCACCCTCTCGCGGTGGCGAATATTCTTGCCGAAATGCATATGGACCATCAGAGCCTGAT GGCAGCCATGCTGCATGACGTGATCGAAGACACCGGTATCGCCAAGGAAGCACTGCAAGCGCAGTTCGGTGAAACCGTGGCCGAATTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCTGAAAACTTCCAGAAAATGGCCATGGCCATGGCACGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAACGCCGCCGCATCGCCAAGGAAACCCTGGAAATCTATGC GCCCATCGCCAATCGGCTGGGCATGCACGCCATCCGCATAGAATTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCCGCGCGAATCTACCAG GCGGTCAAGCGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATTGAGGAATCCCTCAGCCACTGCCTGGCCATCGATGGCATTCAGGGCGAGGTCA GCGGTCGGCAGAAACACCTCTACGGCATCTACAAGAAAATGCGTGGCAAGCGCCGGGCCTTCAACGAGATCATGGACGTCTACGCGTTCCGGATCATCGT CGACAAGGTCGACACCTGCTACCGCGTCCTGGGCGCCGTGCATAATTTGTACAAACCGTTGCCGGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCGCTGCACACGACGCTGTTCGGCATGCATGGCGTTCCGATCGAAATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTATAAATCCAGCGGCGACGAGCAGCCAAAAGGCACTCACGCCCGCGCGCGCCAATGGGTCAAAGGCGTGCTGGAGATGCA GCAGCGCGCCGGCAACTCGCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG TTGCCCAAGGGCTCCACGGCAGTCGACTTCGCCTATGCAGTGCACACCGACGTCGGCAACAGCTGCATTGCCTGCCGGATCAACCGTCGACTCGCGCCGC TGTCCGAACCCCTGCAAAGCGGCTCCACGGTCGAAATCGTCAGTGCTCCGGGCGCGCGTCCGAACCCGGCGTGGCTCAACTTCGTGGTCACCGGCAAGGC GCGCACGCACATCCGCCATGCACTGAAACTGCAACGCCGCTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAAGTCCTCAACGGCTTCGACAGC ACGCTGGAAAAAATCCCGGCCGAGCGCATCCAGGCGATGCTCACCGAGTATCGCCTCGAGCTGATCGAAGACCTGCTGGAAGACATCGGCCTGGGCAATC GCATGGCCTACGTCGTCGCCCGACGCCTGCTCGGGGAAGGCGAACAGCTGCCGAGCCCGGAAGGTCCACTGGCGATTCGCGGCACAGAAGGCCTGGTGCT CAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCCGCAGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAC ATCAGCGAAATCCGCCACAATCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAATGTCGAACTGCGCGTCGAGCTGGAAC ACCAGCGTGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCGGCCGACGGCAACATCGAAAAAATCAGCATGGACGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTGATCCGCATCACTCGGATGCGC GCCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCACCCATTACAAGGAGTCATCAATGACCAAGACCGTTATCACCAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCCCAGGCGATCAAGGCTGGCA ACACCGTTTACATGTCGGGTCAGATTCCTCTGGACCCAAAAACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCGTCCAGGTCTTCGAGAACCTCAA GGCCGTGGCTGAAGCCGCCGGTGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAACCGTACCCAGCCCGCGCCGCCATTGGCGTCGCGGCCCTGCCAAAGGGTTCGCAGGTTGAAATGGATGCCATTCTGGTCATCG AGTAATGCGTCCGGCGCAGCCTCTGGCTGCGCCGACTGCTCTGCTGTAAGGAAAGCTTGATAGGATTCCACCATGCGCAAAGCGCTTGCTCTCTCGCTGC
|
|
| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSTYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILAEMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS TLEKIPAERIQAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|