Pseudomonas sp. 11/12A, GQ39_RS24115
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCGGCCTTCACCGGCGCGCAGCAGCGTGCCGACCCGTTCCTTCATCTCGCGCGCCGCCTTGTTGGTAAAGGTCATGGCGACGATGTACTGGGCGCGGA TGCCACAGTTCTGGATCAAATGTGCGATCTTGCGCGTGATCACGCTGGTCTTGCCGGAGCCAGCGCCGGCGAGCACCAAAAGAGGGCCGCCGACGTAGCT CACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATACGTAAATTCAGGAGTCAGTACGAAATGGGCCGGCATTTTAACAGGCTCAGCGATTTGTGCTGC TCTGTCCGACTTGTGACGTACAACGCGATCTCTATTTGCCGGTTTTGTTACTTTCACGCAGGATGCGCGACCAAATTGCGTCTACTGTTCGTAATTCCGG ATACAAAGGCTTCGTTTTGATAACTGATGTCATTGGTCATTGGTTATCGGCACGGCATAATGCCCACCGCCTACATATTTGCAGAGTCTAGGGAGCTAGC
|
|
| DNA Sequence for Gene |
>GQ39_RS24115
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCGAAGAGCCAGCGTGGGCAGCGTTGTTGCGCGAGTGTCTGGCTCCGATGGGGAGCTCGG CCGTGCTCATCAGCGCGCCGAGTTGGGAGTCGGTCAGCAGTCTGTTCGATGACAACCGCAGTGCGGTGTTGTTGACCGTCCCGGCTCTTCAGCCGGCGCC TGGCCGTTGCTGTCTGCCGACGGTGTTGCTGCTTGAACATGAACCGCTGACTCCACCCGACGGTGTGAGTGACTGGCTGGTACGCGAGCATCTCGACCCG AGCATGCTGCGCCGGTGCCTGCGGCATGTGCGTGAGCGTGGCGTGCTGGAAACCACCCTGCAACGACTCGCCGAGCAAGACCCGCTCACCGGCATTGCCA ATCGCCAGGGCTTCCAGACCTTGCTGACGGCGCGATTGGCCGAAAACGAGGGGCGAGGCCTGGCGCTGGGTCACCTGGACCTCGATAACTTCCGTCATGC CAACGACGCCCTCGGCCATCAGGCCGGTGACCGGTTGATCCTGCAAGTGGTCGCGCGGCTCAAAAGCCAGCTTGAGGCCGGCGATCAACTGGCACGGCTG GGCAGCGATGAATTCGCGTTGCTGATCGACACCCGCCGCGCGCCTCAACGCGCGGAATGGATGGCCGAGCGCATCACCGAAGCGCTGGCCGAGCCGTATT GGGTCGATGGTGAGAGCCTGCTGATCGGTTCCAGCCTGGGCATTGCCCACGCCCGGGCCCAGGCCGGTGCCGATCCGTTGATGTGGCATGCGCACATCGC CATGCAACAGGCCAAGAGCACTCAGGGCTGTACCTTCCATATCTTCAACGAACGCATCAACCGCAATGCCCGCAGCATCGCCGATCTCGAAAGCGAACTG CGCCGGGCATTGCGCCGCGATGAGCTGGAACTGCATTACCAGCCACGCCTGAACCTTGAGGACGGGCAAATCGTCGGACTCGAGGCGTTGGTGCGCTGGC GCCACGGCGAGCGTGGCTTGCTGCCACCGAGCGAGTTCGTGCCGCTGGCCGAGCAAAGCGGTCTGATCGTGCCGCTGGGGTACTGGGTCATTTCCCGGGC CTTGCGCGACATGCAGGCATTGCTCGAGCTCGGGATACCGCCATTACACATGGCGATCAACCTGTCATTCCGACAGTTTCAAGACAGTCAGTTGCTCTCG ACCCTGAGCCGGCTGATTGCTGAACGTGGCGTCGAGGCGCAATGGCTGGAGTTCGAATTGACCGAAACCGCGGTCATGCGCCGCAGCGATCTGGTGAAGC AGACCATGGATGCCCTCGGGCGCCTTGGGGTGCGCTTCTCCCTCGACGACTTCGGCACCGGGTTTTCCTCGTTCGTACACCTCAATAGCCTGCCGATCAC CTTGCTGAAGATCGACAAGAGTTTTGTCGGCGGCATGGAGCAACGGGAAGAGAATCGCAAACTGGTCCACGCGATGATCAACCTGGCGCACAACCTCAAC CTCGAAGTCGTCGCCGAAGGGGTGGAGACGTCGGAGCAACTGGACTTGTTGCGCGGGTTTGAGTGCGATCAGGTACAGGGTTATCTGATCAGCAAGCCCT TGGCCTTGGCGGATTTGGTGGAGTACCTGACGTTTGACTCCAGTCAGAAGGCGCCGCTGGAAATCGTCAGCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCGCGAATAATCGGCTGCCACGGAGCCCTGTAGGAGCGAGCTTGCTCGCGATGATCGACAACGATAACGCTGGTTCGCAGGTGCACCGCGGCGTTCTCAG GTTTATCGCGAGCAAGCTCGCTCCTACAAGGGATCTCAGTCGGTCTGAGCAACCCCGAAGCGCTGCTCTGATGGTGTGTCCCGCCGAATCATGCGCTTCA TCTTCCACTCGAACGCCAGTGTCAGGCTCACCGCCGAACACGCCAGGCCCAGCGCCAGGCCCCACCAGACGCCCGTCGGCCCCCATTGCAAGTCGAACGC CATCCACCAGGCGGCTGGCGCGCCGATTAGCCAATAGCAAGCCAGACCAACCAGGAACGTGGTCTTGGCGTCCTTGAGGCCACGAATGCAGCCCATGGCG ATGGTTTGCGTCCCGTCGAACAGCTCGAACCACGCCGCCACCGCCAACAGGCTCACCGCCAGGTGGATGACGTCGCGAAACGCCGGGTCGTTGTGGTCAA
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLAEEPAWAALLRECLAPMGSSAVLISAPSWESVSSLFDDNRSAVLLTVPALQPAPGRCCLPTVLLLEHEPLTPPDGVSDWLVREHLDP SMLRRCLRHVRERGVLETTLQRLAEQDPLTGIANRQGFQTLLTARLAENEGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVARLKSQLEAGDQLARL GSDEFALLIDTRRAPQRAEWMAERITEALAEPYWVDGESLLIGSSLGIAHARAQAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSIADLESEL RRALRRDELELHYQPRLNLEDGQIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQALLELGIPPLHMAINLSFRQFQDSQLLS TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPITLLKIDKSFVGGMEQREENRKLVHAMINLAHNLN LEVVAEGVETSEQLDLLRGFECDQVQGYLISKPLALADLVEYLTFDSSQKAPLEIVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|