Pseudomonas sp. 11/12A, GQ39_RS16740
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGGCTTGATGCAGCCCTGGCGGTTCATCCGTATCAGCGACCGAACCTTGCGCGGGCAGATCCGGGAACTGGTGGAACAAGAGCGCATTCGCACCGCCG AAGCCCTTGGCGAACGCACTGACGAATTCATGCAGCTCAAGGTCGAAGGCATCAATGATTGCGCCGAGGTGTTGGTGGCGGCGCTGATGGACGATCGCGA GCGACATATTTTCGGTCGTCGCACCTTGCCGGAAATGGACATGGCTTCGTTGTCCTGCGCGATCCAGAACCTGTGGCTGGCCTCCCGGGCCGAAGGGTTG GGCATGGGGTGGGTCTCGCTGTTCGAACCGCAAGACCTAGCCGATTTACTCGGCTTGCCGCCCGGTGCCAAACCACTGGCTATTTTGTGCCTGGGACCGG TCAAGGAATTCTACCCGGCGCCGATGCTGGTCCTTGAAGGCTGGGCGCAGGCGCGTCCGCTAAGTGAATTGTTGTATGAAAATTATTGGGGAGTGCGCCA
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| DNA Sequence for Gene |
>GQ39_RS16740
ATGAGTGTGGCGTTGTTGAGTGTCGCCGCCGTGGCGCTGGATGCGCTGCTGGGTGAGCCCAAACGCTGGCATCCGCTGGTGGCGTTCGGCCGGTTTGCCG AGCGTATCGAGCAGCGTTTCAACGCGGGTGGTCGCGGCTGGCGCAGTCACGGGGTCACCGCGTGGGTGATTGCGGTGTTGCCGTTGACCTTGTTGGCCAC GGCCTTTTCCTGGGCGCCTTATGTTGGATGGGCAGTGGAGATTCTTGCGTTGTACTGCGCCCTCGGCATGCGCAGCCTGGGCGAACACGTCGAACCCGTG GCCAGGGCCTTGCGCAGCGATGATCTGGATGAGGCGCGTACGCGCGTCAGTTACCTGGTCAGCCGCAAGACCAGCGAGCTGGATAAAACCGAAGTGGCCC GTGCTGCCACCGAGTCGGTACTGGAAAACGGCAGTGATGCCGTGTTTGCCGCACTGTTCTGGTTTGCCGTGGCCGGTGCGCCAGGCGTCGTGCTCTACCG TTTGAGCAACACGCTGGACGCCATGTGGGGCTATCGCAATGAGCGCTTCGAGCGTTTCGGTTGGGCGGCAGCCAGGATTGATGATGTGCTCAATTACATT CCCGCGCGTTTGGTGGCATTGACCTACGCCTTGCTGGGCAAGACCCGACTGGCCCTGAAATGCTGGCGGACCCAGGGCCCGACCTGGGACAGCCCGAACG CCGGCCCGGTGATGGCTGCGGGGGCCGGTGCGCTGGGCGTCGAATTGGGTGGGGCGGCGATCTATCACGGTGAACTGCATCAACGTCCGCAACTGGGCGA AGGCGTGCCGGCGGATGCCGACTCCATCGATCGTGGCTGGCAACTGGTCCAGCGCGGGGTATGGTTATGGCTGCTGATTCTCTGCGTGGGGGCTGAATTT TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCACGGTGGACGGTTGCGCAAGGCGGCGCTCGAATACGGCATCGAAGAAGCCGATTGGCTTGACCTGTCCAGCGGCCTCGCGCCCTGGCCGTTTCCCGTT CCGGATATCCCGCTGCGGGCCTGGGCGCGGTTGCCGGAAAACGATGACGGGCTGGAACAGGCCGCCTGCGATTACTACGGCACCCTGCAGGTATTGCCGG TGGCGGGGTCGCAGATGGCCATCCAGTTACTGCCGCGTCTGCGACGGGCCGGGAAGGTTGGCGTGCTGTCGCCGTGTTATGCCGAACATGCCGAAGCGTG GCGCCGCAATGGCTACATCGTGCGTGAGGTACTGGAGCAGGAAGTCGATTTCTTTGTCGACAGCCTGGACGTGTTGGTGGTGGTCAACCCGAATAATCCC ACCGGCTTGAGCCTGCCCCCCGCTCGTCTGCTCGACTGGCACTCACGGCTGGCCCAGCGCGGTGGCTGGCTGGTGGTGGACGAAGCATTCATGGACAACA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGRFAERIEQRFNAGGRGWRSHGVTAWVIAVLPLTLLATAFSWAPYVGWAVEILALYCALGMRSLGEHVEPV ARALRSDDLDEARTRVSYLVSRKTSELDKTEVARAATESVLENGSDAVFAALFWFAVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAARIDDVLNYI PARLVALTYALLGKTRLALKCWRTQGPTWDSPNAGPVMAAGAGALGVELGGAAIYHGELHQRPQLGEGVPADADSIDRGWQLVQRGVWLWLLILCVGAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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