Pseudomonas sp. 11/12A, GQ39_RS12390
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGTTCAGCCGGCAGTTTCGGGCGCTGACCCGTTTGTCGCCGAGTCAGTATCGGGGCGATCGGGGTTAGAGGGTTTCGGGGTTGGGGCCGTGGGCAGGTC CGTTTCTTCGGTGATGGCGACTTTTGGTTCCGCCCTTACGGCGAGTCACTTTCGAAGCGCGCGAAAGTAACCAAAGCGCTCTGCCCTTGGTTACTTGGGG CTTTTCCAAGTGACTCGCCGTAAGGGCGAAACCGCCAGCACCCGTTACCGCAGAAACGGATATGTACTCCCATGTTTCTTAACGGGGCGTCAGCGCAACC GATGCTCCCATATGTAACACCGCCCAGCGCGGCAACGGCGCAACCCTTCCAGTCACAACGCCCCTGAAACACCTCTAACCCAAGGCCCAAAAACAATTTC ACGACTGTAACTGGAAACAGGCACATTGATTGCTATTGTTAATATCGTATACGAAATCCCCAATACGATATTCAACAGCACTTAACCCAACGAGGCCTCT
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| DNA Sequence for Gene |
>GQ39_RS12390
ATGAAAAACCCCGCATTTGCCGTAGCCCTCAGCGCTGTTCTCAGTACCTCCTTCATCGCCACCGCACAGGCCGACAAGCTCGATGACATCATCGGCTCGG GCAAGCTGCGCTGTGCCGTCACCCTGGACTTCCCGCCCATGGGCTTCCGCGATGCGGGCAACAACCCGGCCGGCTTCGACGTGGACTACTGCCATGACCT GGCGAAGATCCTCGGGGTCGAGGCAGAAGTGGTCGAGACACCGTTCCCTGACCGCATCCCGGCGCTGGTCTCGGGGCGCGCCGATGTGATCGTTGCCTCC ACCTCCGACACCCTCGAACGCGCCAAGACCGTCGGCCTCACCGTGCCGTACTTCGCGTTCCAGATGGTGGTGCTTACCCGCGACGATACCGGCATCAATG GCTTTGACGACCTCAAGGGCAAAGCGGTGGGCAATACCAGCGGCACCTATGAGGCCATCGCCCTGGAGAAAGATGTGAAGAACTGGGGCACCGGCAGTTT CCGTGCTTACCAGTCGCAGAACGACACCTTGCTGGCCGTCGCCCAGGGCCACATCGACGCGACCGTGGTCACCAACACCGTCGCCGCTGCCACGCTCAAG TCGGGTAAATACAAAAACCTCAAAGTCGCCGGGAACGCCCCCTACGTCATCGACTACGTGTCCCTCGGCGCCAAGCGCAACGAGTATGGCCTGCTCAACT ACCTCAACCTGTTCGTCAACCAGCAAGTGCGCACCGGTCGATACAAGGAGCTGTTCGTCAAATGGGTCGGCACCGATATCGCGCCGACCAACCTGACCGT GCCACAGGTCTACTACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGCCCGGTATGCCCAGGTCCACTTTTCTGACCGGTCGCAGCCTGGTCGCGGGCGCTGCTCAAGGCGCCCTGTTGTTCGCCGATGTCGGCCTGAGTTTC TGGGGCGGAGTGGATTCCGCCACTGGCGAGGTCATCGATCGCCATCACCCCCTCAGCGGCGAATACCTGGCCGGTTGTGTGCTGGCGATTCCCAGCGGCC GTGGCTCGTGCACCGGCAGCAGTGTGTTGATGGAGCTGATCAGCAACGGCCATGCACCGGCGGCACTGGTGCTGGCCGAACCCGACGAGATCCTGACCCT GGGCGTGCTGGTGGCTCAGACCATTTTCGAGCGTTCCTTGCCGGTGCTGTGCATCGGCCAGGAGGCCTTTGCCGCCTTGCGCGGCGGGGCCTTCGCCCGG GTCGAAAACACCGAGGTCAGCGTGTTCGATCAGCCACCGGGCGATGCCTGGCAGGCCATCGACAGCCCGCTGCAGAAAGACGCAACACACACCTCCATCG
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| Amino Acid Sequence |
>amino acid ABC transporter substrate-binding protein
MKNPAFAVALSAVLSTSFIATAQADKLDDIIGSGKLRCAVTLDFPPMGFRDAGNNPAGFDVDYCHDLAKILGVEAEVVETPFPDRIPALVSGRADVIVAS TSDTLERAKTVGLTVPYFAFQMVVLTRDDTGINGFDDLKGKAVGNTSGTYEAIALEKDVKNWGTGSFRAYQSQNDTLLAVAQGHIDATVVTNTVAAATLK SGKYKNLKVAGNAPYVIDYVSLGAKRNEYGLLNYLNLFVNQQVRTGRYKELFVKWVGTDIAPTNLTVPQVYY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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