Pseudomonas sp. 11/12A, GQ39_RS09720
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAACACAATCAGCCCGACACCGCCCTCGGCCCGCGCCCGGTGATAGGCGATCAACTGTTCGTTGACCAGGTTGTCGGTGGGCATCGAGGTGTCGTGACC GCTGGACATGATGCGGTTTTTCAGGCGCTTGCCACGGATCTGCAAGGGTTCGAACAGGTGCGCGAAGGCAGGGGTCGGGCTCGGCATGGGGCGGGTACTC CGGGCAGGCTGACCTGTAGGAGCGAGCCTGCTCGCGATGGACTTGAGGACGACGCGTTCATCCAGACAACACGCGTTAGCGTTAACGTCCATCGCGAGCA GGCTCGCTCCTACAGAGGCATTTGGTTTCTGGTTGTTATTTTTCTCTATAGAAATTTACCCGCAGTAAAAAATCAACTTGTTTTTTTACTGGACGTTGCA GTAGTTTGAAATGGCACCCGCATCTTGGGGCGAACCTCACAACAATAAAAAAGGGCCGCACCGACTTGAGTTCGGCGGGCACCTGCACGAGGAACCACTG
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| DNA Sequence for Gene |
>GQ39_RS09720
ATGAAATCGCAAACGCTCAAGCACGGTTTTTATCCCTTGGTGTTGTCCATGGCCATGGGCCTGGGCAGCGCTCAGGCGGCATCGGAGATGGTGGTGGTCG GTTACGGCGGCGCCGGACAAAAAGCCCAGGATGTGGCGTTCTTCCAACCGTTCAGCGTGGTGGATCAAAGCAAGGTGATCCAGAGCGAATACAACGGTGA GATGGCCAAAATCAAAGTCATGGTCGACACCGGCAACGTCGATTGGGACGTGGTGCAGATCGAAGGTCCGGACCTGATGCGAGGCTGCGAAGAGGGCATG TATGAGCGCCTCGACTGGACCCGCCTGGGCCATGCCGATCAATTGATCCCCGAAGCTGCGCAGGAGTGCGGTTCGGCCGCTCTGGTGTGGAGCGTGGCGA TTGCCTACGACACCGACAAACTGGCCCAGGCCCCCACCTCATGGGCGGACTTCTGGGACGTGCAGAAAATCCCCGGCAAACGCGGCTTGCGCAAACGCGC GGTGTACAACCTGGAGTTCGCCTTGCTGGCCGACGGGGTGAAAGTCGAGGACGTCTACAAGGTGCTCAATACCTCGCAAGGCGTGGACCGGGCATTCGCC AAACTGAACCAGCTCAAACCCTACATCCAATGGTGGGAGGCCGGCGCCCAACCGCCGCAATGGCTGACGGCCGGCGATGTGGTGATGACCTCGACCTACA GCGGACGCATCGCTGCCGCCGCGCAAACTGGTAGTCATTTGGGGCTGGTGTGGCCTGGCAGTCTGTACGGCATGGACTACTGGGCAATCATCAAGGGTTC GAAACACGTCGATCAGGCCAAGCGCTTTATCGCCTTCGCCAACCAGCCGGATGCCCAGGTCAATTACGTGAAACAGATTCCCTATGGCCCGACCAATACC GAGGCCGCCGCTCGCCTGGACGACAAACTGGCGCAATGGGTACCGACCGCGCCGCAGAACCTCAAGGGCGCGTTGTCGATGGACGTCGGTTTCTGGGTTG ACCATGGCGAAGAGCTGGAAGAACGTTTCAACGCCTGGGCCAGTAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCCTGTGGCTGGACGTCCTTGCACGTCCAGCCTTACTGTCTGCCCGGCCGACCCGTCTGGAGAATTAAAACAATGAACGAAATCGCGACTCACCTGAC TGCCGCGCCTGCGCGCAGCACTACCGAACAGCGCCTGCGTGAAGAGTTGGCCGCCTGTTATCGCCTGATTGCGCATTACCGCATGACCGATCTGATTTTC ACCCACATTTCGGTGCGTATTCCCGGCCCGGAACATCATTTTCTGATCAATCCCTATGGGTTGATGTTCGATGAGATCACCGCATCGAATCTGGTGAAAG TCGACCTCGATGGCCATGCCGTCGAGCCGTCGCCATTCTCGGTGAACCCGGCCGGTTTCGTGATTCACAGCGCGATTCATGGCGCCCGTGAAGATGCCCA ATGCGTGCTGCATACCCACACCAAGTCCGGCTGCGCGGTGGCCGCGTTGAAGTGCGGCTTGTTGCCGGTGAATCAGATATCCATGGAGTTCTACGGTCGG
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MKSQTLKHGFYPLVLSMAMGLGSAQAASEMVVVGYGGAGQKAQDVAFFQPFSVVDQSKVIQSEYNGEMAKIKVMVDTGNVDWDVVQIEGPDLMRGCEEGM YERLDWTRLGHADQLIPEAAQECGSAALVWSVAIAYDTDKLAQAPTSWADFWDVQKIPGKRGLRKRAVYNLEFALLADGVKVEDVYKVLNTSQGVDRAFA KLNQLKPYIQWWEAGAQPPQWLTAGDVVMTSTYSGRIAAAAQTGSHLGLVWPGSLYGMDYWAIIKGSKHVDQAKRFIAFANQPDAQVNYVKQIPYGPTNT EAAARLDDKLAQWVPTAPQNLKGALSMDVGFWVDHGEELEERFNAWASK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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