Pseudomonas sp. 11/12A, GQ39_RS02625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 11/12A GQ39DRAFT_scf7180000000022_quiver_dupTrim_8682.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACGGTGCCATCATTGTGGCTCGTCAAAAATACACACTGATCGCCGATACCACTGACTTCCGTCAGGAGTCCTTTAAGTGGTCGAAGATGCACAGACAA GGCGTTGTCACTGGTGTCTTCGAAGAACGTGCGCAAAAGCGTTTTCGTGCGCTCGTACTCAAGTGTCAAGGACGAGTCCGCAGAGGGGGACAGGTAGAAT CCATGCAGGTCGGAGGCTCTCGTCCTGACGGCTTGTAACGCGCTCAGTATTGTCTCGTACTCGGCCTGTTGGCCGGTATGCCGTTGAGCCGGGGTGGGCG CAGCAGTTGCAGTTTGCATGGGAAAGCGACTCTTTAATGGATGAGAGTCGCCAGTCTCAAAGTTTTGTTCACTGCGGATGCGGTACATATGTAGTGCATG TTGTACCGTGTCTGGCTTGCCGGAAGCGGGATCGCCCCCTAGTCTAGCTGTAGCGATTTCGTCCGGAAGACGAGCAAGCAGTGCTAATGCAAGGGACCTC
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| DNA Sequence for Gene |
>GQ39_RS02625
ATGAATCAAACGCGGACACTCGGAACGCCACGGTTGTTGGGCATCGTCTGGCCATTTATCGCCGTTGTGGTGTTTCAAGCCCTATTGGGTGGCGTTAGCC TATATGTGCTGTCGGCGGTTCGCGGCTATGTCGCCGGTGAAAGCTTGTGGTCCAAAGGCCAAAAAGACGCCATCTACTACCTCAATCTCTACGCGGACAG TCGTGACGAGTCGATTTTCCGCAAATACCAGGACGCGATGGCCGTGCCTCAGGGCGGTCACGAGTTGCGGGTAGCGCTGGATCATCAACCGCCGAATATC GAAGCGGCGCGCCTGGCGATTCTCAAGGGTGGCAACCACCCGGATGACGTTCCCAGTCTGATCTGGCTGTACCTCAATTTCCGCCATTTCAGTTACCTCG AGAAGGCTATCGACCTCTGGACGGTGGGTGATTCGTATCTGGTCAAGCTTGATGATGTTGCGCAGGACATGCACCGGCACATTGCCGCTGGTCCGGCCTC CGAGGCCGACATCAAGAACTGGAAGGCGCAGATATTTGCAATCAATGTTGAAGTGACTCCGGCAGCGAAAGCTTTCAGTGACGCATTGGGAGAGGGATCT CGGGTCATTCTCCGGCTGTTACTGGTGACCAACCTCGCCACCGCCCTTGGCCTGATTGCGCTGGCCTTGATGCGCACCCACAAGTTGCTCAAACAACGTC ATGCCTTCGCCGATGCCTTGCAGCTCGAGAAAGACCGGGCGCAGATCACCCTGCAATCGATTGGCGACGCGGTGATCACCACGGATGTCGACGGCGCAAT TGCCTACATGAACCCGGCGGCCGAGACATTGACCCACTGGAAGGCCGAGCAGGCGACGGGTTTGCCGCTGGCGGCGCTGTTCAATCTGCTGGACGAGAAT GCCCACACCGACGGATTCACGTTGATCGAGCGAATTCTGAGCGGTCAGCTCAGCGGTGGCAGTGAACATTCCAAATTGATTCAACGCCTCGATGGCAGCA CGGTGTCGGTCACGCTGGTTGGCGCGCCGATCCGCAATGCCGGCAACGTCAGCGGTGCCGTACTGGTGCTGCACGACATGACCCAGGAACGGCAATACAT CGCCAATCTGTCCTGGCAGGCTACCCATGACGCATTGACCGGGCTCGCCAACCGTCGCGAGTTCGAGTATCGCCTGGAGCAGGCGCTACACTCGCTGGCG CGGCAGACCGGGCGTCACGCCCTGATGTTTCTCGATCTGGATCAATTCAAGCTGGTCAACGATACCTGTGGCCATGCGGCGGGAGACGAATTGCTGCGGC ATATCTGCGCGCTGCTGCAATCAGGATTACGCGAAGGCGATACCCTCGCTCGGCTGGGCGGCGACGAGTTCGGCATCCTGCTGGAAAATTGTGGGTTGGA GGTGGCGGAAAAAATTGCCGAGAGTCTGCGCCAGACCGTACAGGATCTGCACTTTGTCTGGAAAGGTCGACCTTTCGTGACCACCGTCAGTATCGGACTG GTTCATGTTGCGCAACATCCGTCCACACTCGAGGCCTCGTTGCGCGCTGCCGACATGGCCTGCTACATGGCCAAGGAAAAAGGTCGTAACCGGGTTCAGC TCTATCATCCCGATGATTCGGAACTGTCCCTGCGTTTCGGCGAAATGGCTTGGGTGCAGCGCTTGCACATGGCCTTGGAAGAAGATCGCTTCTGCCTGTA TGCCCAGGAAATCGCGCCGCTTGGCCGTACTGAAGCGGGCAGCGGACACATTGAGATTCTGCTGCGTCTGCATGACGAGGCCGGGCGCATGATCTTGCCC GACAGCTTTATTCCGGCGGCCGAGCGTTATGGTCTGATGAACTTGATTGATCGCTGGGTCGTGCAAAACGTATTCAAGATCATTGCCCAATGTCGTGCCG AAAAGCGTCAGGGGCCTTTGGCCATGTGTGCGATCAATCTGTCAGGCACCACCATCGGAGATGAGGCTTTTCTGGACTTCCTGCGTGAACAGTTCGTTAC TTATTCAATACCGGCCGAAATGATTTGTTTTGAAATTACTGAAACCAGCGCCATTTCAAATTTGGGCAGCGCGATCAGATTCATTAATGAACTCAAAGGC TTAGGCTGCCATTTTTCGCTGGACGATTTTTGCGCCGGTATGTCCTCATTCGCTTACTTGAAACATTTGCCTGTAGACTTCCTGAAGATCGACGGGAGTT TCGTAAAGGATATGCTGGACGACCCGATTAACCGCGCCATGGTCGAGGTGATCAATCATATCGGTCATGTCATGGGTAAGCGTACGATTGCCGAGTTTGT CGAGACGCCTCAGATCGAGCAGGCATTGCTAGAGATCGGGGTGGATTACGCTCAAGGGTATCTCATCGAGCGCCCGCAACTGTTTACCTGCGATAGTTTG CAAAGTCGTCCCGCCAGGCCTCAGCCTTTGTTGTTCAGGGCGCCTGGCACGTTCCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCTCTTGCTGATCCCAACAATCACAATCAAAAGGAGCTCGACAGTGATCGACACATTCAACCGAACCGGACCACTCATGGAAGCTGCAAGTTATCCCG CCTGGGCTCAACGATTGGTCCAGGACTGCAGCGAGAGCAAGCGCCGGGTCGTCGAACACGAACTGTATCAGCGCATGCGTGACAACACGCTCAGTGCAAA GACCATGCGCCAGTACCTGATAGGTGGCTGGCCGGTGGTTGAACAGTTCGCGTTATACATGGCACAAAACCTGACCAAGACCCGTTTTGCCCGCCACCCA GGCGAGGACATGGCGCGTCGCTGGTTGATGCGTAACATTCGCGTCGAATTGAATCACGCCGATTACTGGGTGAACTGGAGCCGTGCTCACGGCGTCACTC TGGAAGATCTGCAGGCGCAACAGGTAGCCCCTGAACTTCACGCCTTGAGCCATTGGTGCTGGCACACCAGTTCCTCGGACTCGCTGATCGTGGCCATTGC
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| Amino Acid Sequence |
>membrane protein
MNQTRTLGTPRLLGIVWPFIAVVVFQALLGGVSLYVLSAVRGYVAGESLWSKGQKDAIYYLNLYADSRDESIFRKYQDAMAVPQGGHELRVALDHQPPNI EAARLAILKGGNHPDDVPSLIWLYLNFRHFSYLEKAIDLWTVGDSYLVKLDDVAQDMHRHIAAGPASEADIKNWKAQIFAINVEVTPAAKAFSDALGEGS RVILRLLLVTNLATALGLIALALMRTHKLLKQRHAFADALQLEKDRAQITLQSIGDAVITTDVDGAIAYMNPAAETLTHWKAEQATGLPLAALFNLLDEN AHTDGFTLIERILSGQLSGGSEHSKLIQRLDGSTVSVTLVGAPIRNAGNVSGAVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHSLA RQTGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLREGDTLARLGGDEFGILLENCGLEVAEKIAESLRQTVQDLHFVWKGRPFVTTVSIGL VHVAQHPSTLEASLRAADMACYMAKEKGRNRVQLYHPDDSELSLRFGEMAWVQRLHMALEEDRFCLYAQEIAPLGRTEAGSGHIEILLRLHDEAGRMILP DSFIPAAERYGLMNLIDRWVVQNVFKIIAQCRAEKRQGPLAMCAINLSGTTIGDEAFLDFLREQFVTYSIPAEMICFEITETSAISNLGSAIRFINELKG LGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERPQLFTCDSL QSRPARPQPLLFRAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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