Pseudomonas sp. 10B238, RT21_RS21620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold20, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCAAACTGAGCGATGCACCACTGCGCATTGTTAGGTGACCAGATGCCCACCCGCTCGCCAGGTTTGAGGCCGAGTGCCAGCAAGCCCCGTGCGCACCG GTCCACCTCTTCGGCCAGCTGGGCCCATGTGTAGCGCAGGTTCTGGTGACGAACGACCAAGGCCTCACGGTCGGAGAACCGCTCGACAGCCCGGTCGAAC GCCGCACCGATGGTCATCGGCAACAGGGGTTTGGTCTGCGGTCCGCAGGTGTAGCTCGGAAGACTCATGTCGAAATTCCTCAGTCTTATGTTTGTTATGA GGCCTTACTGTCCCGCGCGCTGTTGTTGACAGTCATTCGGGACGTGGTTACGTTAACGTAAAGGTAACAGCGTGACAACCCACCGCACCCTACGCCAAAA GTCGGTGCGCAAGCGTGACAAAAACAGGCTGAGCCGCAGGCGAAATCCAGCTTTTGATCGGCGGTCGGATCAGAACAACTACAAAATAGACAGGTGGCAC
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| DNA Sequence for Gene |
>RT21_RS21620
ATGAACTATTCAGGCCTCAACTTCGCGCTCGGTGAAACCGTGGACATGCTCCGCGACCAGATCCGCGGTTTCGTTGCGAACGAACTGGCGCCCCGCGCCG AAGCCATCGACCGTGACAACCTCTTCCCCAGCGACATGTGGCGCAAGTTTGGCGACATGGGCCTGCTCGGTATCACCATAGACGAGGAATACGGCGGCGC TGGCATGGGTTACTTGGCACATGTCATCGCTATCGAAGAAATCAGCCGTGGCTCGGCCTCGGTGGGTCTGTCCTACGGCGCGCACTCCAACCTCTGCGTC AACCAGATCAACCGTAACGGCACGGCGGAGCAGAAAGCGAAATACCTGCCCAGGCTGATATCCGGTGAGCACGTCGGTGCGCTGGCCATGAGCGAGCCGA ATGCAGGTTCGGACGTGGTTTCGATGAAGCTGCGTGCCGATCGCAAGGGTGACCGCTTCGTGCTGAACGGCAGCAAGACCTGGATCACCAACGGTCCGGA CGCCAACACCTATGTGATCTATGCCAAGACCGATCTCGACAAGGGTGCGCACGGCATCACCGCTTTCATCGTCGAGCGCGACTGGAAGGGTTTCTCGCGC GGCAGCAAGTTCGACAAGCTCGGCATGCGCGGCTCCAACACCTGCGAGCTGTTCTTCGATGACGTCGAGGTTCCGGAAGAGAACGTGCTTGGCGTCGAAA ATGGTGGCGTGAAGGTGCTGATGAGCGGCCTGGACTACGAGCGCGTGGTGCTGGCAGGCGGCCCGGTCGGGATCATGCAGGCGTGCCTCGATGTGGTGGT GCCCTATATCCACGACCGCAAGCAGTTCGGCCAAAGCATCGGCGAATTCCAGTTCATCCAGGGCAAGGTGGCCGACATGTACACCCAGCTCAACGCCAGC CGCGCCTACCTCTACACCGTGGCGCAAGCCTGTGACCGTGGCGAGACCACTCGCAAGGATGCCGCCGGGGTGATCCTCTACACCGCCGAAGCGGCGACGC AGATGGCCTTGCAGGCGATCCAGATTCTCGGCGGCAACGGCTACATCAACGAATTTCCTACCGGCCGCCTGCTGCGCGACGCGAAGCTTTACGAAATCGG CGCCGGCACCAGCGAGATTCGCCGGATGCTGATCGGTCGCGAGCTGTTCAACGAAACCAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGGCGCTGGAGGCGAACTCAGTAGGGTGGGCTTTAACCCACCTTTCCCCGGCACGGCGGTGGGCTAAAGCGGAACGCCGCCCGGCCCACCCTACGCGAC CGAGCGCACCCACCCCGCGGATTGAACCGGAGCCGAACATGGCCATCCTGAATACCCAGATCAATACCCGTTCACCGGAGTTCGCGGCCAACAGCGCCGC GATGCTCGAACAGGTGACCAACCTGCGCACGCTGCTCGGGCGCGTCAGCGAAGGTGGCGGCGAGAAACCGCAGCAGCGTCATGTCTCGCGCGGCAAGCTG CTGGTGCGTGACCGCATCAACGCCCTCCTCGACCCCGGTTCGGCCTTTCTCGAGGTTGCTCCCCTGGCGGCTTACGAGGTCTACGGTGAAGACGTTGCTG CTGCGGGTGTGGTGGCTGGCATCGGCCGAGTCGAGGGCGTCGAATGCGTGATCATCGCCAATGACGCCACGGTAAAAGGTGGCAGCTACTACCCACTCAC
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MNYSGLNFALGETVDMLRDQIRGFVANELAPRAEAIDRDNLFPSDMWRKFGDMGLLGITIDEEYGGAGMGYLAHVIAIEEISRGSASVGLSYGAHSNLCV NQINRNGTAEQKAKYLPRLISGEHVGALAMSEPNAGSDVVSMKLRADRKGDRFVLNGSKTWITNGPDANTYVIYAKTDLDKGAHGITAFIVERDWKGFSR GSKFDKLGMRGSNTCELFFDDVEVPEENVLGVENGGVKVLMSGLDYERVVLAGGPVGIMQACLDVVVPYIHDRKQFGQSIGEFQFIQGKVADMYTQLNAS RAYLYTVAQACDRGETTRKDAAGVILYTAEAATQMALQAIQILGGNGYINEFPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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