Pseudomonas sp. 10B238, RT21_RS20950
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold17, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATCAGCTGCGTTTGTGGGAACTCACGCATTTGCAACAGGTATTCGATGGGTTCGCCATTCCCCCCGATTTCCGGTTGTTCGACGCTGCCAGTGACAGGC AGAACCTGGAGATACACATCCGGCGCCATACGCTGGTTCAGGCGCAGCTCTTCCTCGCAATAGTGCTTGCGTGCCGCGAGGTTAGTGAAGTCGAGGAAGC CGAAGTCAACCGGCTTCTTCATCTTGTAGGCGTACGCGCCAGTAAGGATGACCCAGGAAATATGGGTCTCGATGACTTTAAAGCCGTCGACCGGGTGGGG GTACAGGGCCGGATTCTGCAGTGCAGCAATCAGTGCTTGGCTCACGGTCACTCCTTGTAGGTTTGTTGGACGGGCGTGTGAGCGCTTCGGGAGCCAGTTC ACACAGTCAAAAAACGCTTCATTATGTCCATCCTCGGTAAGCGTGCAAACCGCCAAGAGGCCGTCTTCGGCGCAAATCAAAGTGCGTATAATGCGCCGCC
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| DNA Sequence for Gene |
>RT21_RS20950
ATGACTAAATCACGCTCGTCTCGCTCCCGTTCCAAACGCCGTTCCGGTGCTTCGCGCCCCTGGCTAGGCTGGATTATCAAACTCTCCATCGTCGCGCTGG TACTGCTGGCTGGCGTCGCGGTATATCTCGATGCGGTGGTGCAGGAGAAATTTTCCGGCAAGCGCTGGACGATCCCGGCGACGGTTTATGCCAGGCCGCT GGAATTGTTCGTTGGGCAAAAACTCGACAAGGATGACTTTCTCAACGAGGTCGATGCGTTGGGCTATCGCCGAGAGAAAACGGTGAGTGGGCCGGGAACT GTATCGGTCGCCAGCAATGCGGTCGAAATGCATACACGAGGGTTCCGCTTCTATGAAGGTGCGGAAGAGTCTCAGCGGATCCGTGTGCGTTTTTCTGGAG ACTTCGTCGCTGGGCTTGCGCACATGGACGGTGGCGAGCTGCCGGTAGTACGTCTCGAGCCACTGGTCGTGGGCGGGCTATATCCCGCGCACAACGAAGA CCGCATTTTGATCAAGCTTGATCAAGTGCCGCCATATCTGGTTGAAACACTGGTTGCTGTCGAAGACAGGGAGTTCTTCGATCATTTAGGCGTGTCGCCT AAATCCATTGCGCGTGCCATCTGGGTAAACCTTACTGCCGGGGAGGTTCGCCAGGGCGGCAGCACACTGACACAGCAGCTGGTGAAGAACTTCTATCTCA CCAACGAGCGCAGCCTGAGTCGTAAGGCTACCGAAGCCATGATGGCGGTGCTGCTTGAGCTTCACTATGACAAGCCAGAGATCCTCGAAGCCTATCTGAA CGAGGTTTTTCTTGGTCAGGATGGTCGTCGCGCCATTCACGGCTTCGGTTTGGCAAGCCAGTATTTTTTTGGAAGGCCACTGGCAGAGCTCAAGCTCCAA CATGTGGCCCTGTTGGTCGGCATGGTCAAGGGGCCGACTTACTACAATCCTCGCCGCCATCCTGAGCGTGCCTTGGAGCGGCGTAATATGATCATCGATC TGTTGGCTGAGCAGCAGGTAATCAGCCCGGATGAAGCTGCCCAAGCGCGGCAAGCGCCGCTTGGTGTGACGCAGCGTGGCAGCCTGGCTGACAGCTCCTA CCCGGCATTTCTCGACCTGGTGAAGCGGCAATTGCGAGAGGACTATCGCGACGAGGACCTTACCGAGGAAGGACTAAGGGTTTTCACCAGCTTTGATCCG ATCATTCAATCCAAGGCTGAAAAGGCCATGACGGACACGCTTAAGCGTTTGGGCAAGGCAGCCGAGGGCGTTGAAGGCGCGATGCTGGTCACCAACCCGG AAACCGGCGAGCTGCAGGCCATGCTGGGTAGCCGCCATCCAGGCTTTGCCGGCTTCAATCGGGCGCTGGACGCATCGCGTCCGATTGGCTCGCTGATCAA GCCGGCGATCTATCTCGCTGCGCTGGAGAAGCCCAGCCAATACACCCTGACTAGCCTGCTGGAGGACGAGCCGTTCTCGGTCAAAGGAACCGATGGCAAG GTGTGGAAACCACAGAATTACGGGCGTACCGCTCATGGTACGGTCTATCTCTATCAGGCCTTGGCCAACTCCTACAACCTATCGACCGCGCGGCTTGGCT TGGATTTAGGCGTGCCGCATGTGCTCAAGACGCTGGCGCGCCTGGGCGCGTCGCCCGACTGGCCGGCTTATCCCTCGATGCTGCTGGGCGCGGGCGGATT GCGCCCGATCGAAGTGGCCGGGGTTTACCAGACGATAGCCAACGGCGGCTTCAACACCCCGTTGCGGGCTATTCGCAGTGTCGTCGCGGCCGATGGCGAA CCCCTTAGTCGCTATCCGTTCAAGATTGAACAGCGATTCGATCCTGGTGCTATCTACCTGACGCAATACGCCATGCAGCGAACGATGCTCGAAGGGACAG GGCGTTCTGTCTACAATCAGATCCCGAAATCGCTGGCGCTGGCCGGCAAGACTGGTACTACCAATGATTCGCGTGACAGCTGGTTTGCGGGCTTCAGTCA GGATTTGCTCGCGGTAGTCTGGTTGGGGCGCGACGACAACGGCAAGACCTCGTTGACCGGCGCCACAGGTGCGTTGCAGGTGTGGGCTGATTTCATGCGT CGTGCCGATCCACTGCCCCTGCAAATGCCCGTACCGGATAACGTGTCCATGGCCTGGGTCGATGCGAAAACCGGCGAGGGCACGTTGGAAAACTGCCCGG GCGCCGTACAGATGCCCTACATCCGCGGCAGCGAGCCTGCACCGGGGCCGGGTTGCGGTATGCAGGCCCCGGCTGAATCGGTCATGGATTGGGTTCGTGG CTGGTTGCCATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTGGCGGCTGGCCGGTTGGTTTATCAAGAGGTTTGAACTGTGAACAAGCAATGGATGATCGTATTGGTGGCGGCGGTGCTAGTGCCGGGCTGCGCCTCGG TCAAGCGCGGCGCAATACCCGTCGTTGATTCGGGGGCGCCGGTATCGGAGGAGGCTTCTGCACGTCAGCCCAACCGCCGGGCTAATGCACCTGCGGCCAC CGCGCAATCTGTCCCTGCGGACTCGGGCGTGATGGTCATGGTGCCGCAGCAAAGCTCCGAACCGTTGCAAACCTTTGGGGCGCCCGATGGCGCCTTCTCT GGAGGCTCTGCGCAGCCGCCTGCAGGCGGAACTGGTGAGTGGACGCCGCCCGCTCAGTCCGCGCCGATGCCCGCCCCGGTCCAGCGACAGCCAATGCCCA GCGGAATCCCGTCAAGCAGTGGGACCTTGTCAGCAGACGAGCAGCTTGATGGTCCGGTGCTGGCACTGCTCACCACTGCGCAGCAACAACAGGGCGGAGG
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| Amino Acid Sequence |
>penicillin-binding protein
MTKSRSSRSRSKRRSGASRPWLGWIIKLSIVALVLLAGVAVYLDAVVQEKFSGKRWTIPATVYARPLELFVGQKLDKDDFLNEVDALGYRREKTVSGPGT VSVASNAVEMHTRGFRFYEGAEESQRIRVRFSGDFVAGLAHMDGGELPVVRLEPLVVGGLYPAHNEDRILIKLDQVPPYLVETLVAVEDREFFDHLGVSP KSIARAIWVNLTAGEVRQGGSTLTQQLVKNFYLTNERSLSRKATEAMMAVLLELHYDKPEILEAYLNEVFLGQDGRRAIHGFGLASQYFFGRPLAELKLQ HVALLVGMVKGPTYYNPRRHPERALERRNMIIDLLAEQQVISPDEAAQARQAPLGVTQRGSLADSSYPAFLDLVKRQLREDYRDEDLTEEGLRVFTSFDP IIQSKAEKAMTDTLKRLGKAAEGVEGAMLVTNPETGELQAMLGSRHPGFAGFNRALDASRPIGSLIKPAIYLAALEKPSQYTLTSLLEDEPFSVKGTDGK VWKPQNYGRTAHGTVYLYQALANSYNLSTARLGLDLGVPHVLKTLARLGASPDWPAYPSMLLGAGGLRPIEVAGVYQTIANGGFNTPLRAIRSVVAADGE PLSRYPFKIEQRFDPGAIYLTQYAMQRTMLEGTGRSVYNQIPKSLALAGKTGTTNDSRDSWFAGFSQDLLAVVWLGRDDNGKTSLTGATGALQVWADFMR RADPLPLQMPVPDNVSMAWVDAKTGEGTLENCPGAVQMPYIRGSEPAPGPGCGMQAPAESVMDWVRGWLP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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