Pseudomonas sp. 10B238, RT21_RS20310
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold16, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCACCAGCGGCTGGCACAGATGCCTATCATCATGCTGACGGCCAGCTCCGATGAGGCTGATCGAGTGATCGGCCTGGAGTTGGGCGCTGACGATTACCTC GGAAAGCCTTTCAGTCCGCGCGAGCTGTTGGCGCGGATCAAGGCGCTGTTGCGTCGGGTCAACTTCGGCCAGGAGCGTGGCAGTGATGTGCGGACATTCG ACGAGTGGCGGCTGGATATGGTCAGTCACCGATTGTTCCATCAGGACGGTGAAGAAGTGCTGCTGTCCGGCGCCGACTTTGCGTTACTCAAGCTGTTTCT CGACCATCCCCAGCAGATTCTCGACCGCGACACCATTGCCAACGCCACCCGTGGCCGAGAGGTCATGCCCCTCGAGCGGATTGTCGACATGGCGGTCAGT CGCCTGCGCCAGCGGTTACGCGATACTGGAAAGTGCCCGCGATTGATTCGAACCGTACGGGGCAGTGGTTATATGCTCGCCGCGCAGGTCGCACCGCACC
|
|
| DNA Sequence for Gene |
>RT21_RS20310
ATGACGCGCTCGGTTAAGCGTCGCTGGTTGCCTGTTCCACGCTCACTGCTCGGCCGCATGCTGTTCCTGACGCTGCTGGTGGTGCTGATGGCGCAGGCGC TGTCCAGTTTCATCTGGGTCTCGCAACTTCGCGCAAGCCAAATGGAAGGGTTGCTCACCAGCGCACGCAGCCTGGCGCATTCGATGTCGGCCAGCGTCAG CTACTTTCGCTCCCTGCCGTTGGGCTATCGTCCGTTGGTGCTTGATCAGCTGCGTAGCATGGGTGGCACACGCTTTTTCGTGTCGCTGAACGACAAGCCT CTGGAGATGCAGATTCTGCCGCCGACCGAGCGTAAGCAGGCGGTGCTGGCCGAGGTCGACGAGGTGCTGCGTGAACGCCTCGGCAAGGACGTCGACATGT CGGTGAGCTTCGTCAGTCCAGACGATCTGCGCATATTCAACGGCGGCCTGAAGCTCGATGAGCTACCGCGATCCTGGGCGCATTACGCATTGAGCCTGGA ACCGCTGAACCCGCCGGTGCTGGTCACCCAGATCCAGATCGCGCCGAACGAATGGTTGTATCTCGCCTCGCTGATGCCGGCGCCCTATGTCAGCCTCGAA GACGAGGGAATCCCCAGGCAGCAACTCTGGTTCATCTTTCTTACCAGCAGTTTCCTGCTGCTGTTCATTGGCATTCTGGTGCACTGGCAGAGCCGCCCGC TCAAGCAGCTGGCGCAAGCGGCGCGGGAAATGTCGCTGGGCAGCGAGGTTGAATTGCTGCCCGAGGCGGGTGGTAGCGAAGTGGTGGAGGTCAGCCGTGC ATTCAACAGCATGCGAGAGCGCATCGGGCGCTACCTGACCGAGCGTAGCCAGCTGTTCAGTGCGATCTCGCATGATTTGCGCACGCCGATCACGCGGCTG CGGTTGCGTGTGGAGCTGCTGGAGGACGAAGCCTTGCAGCGCAAATTCAGTCGCGACCTGGACGAGCTGGAGCTTTTGGTCAAAGGCGCGCTGCAATGCG TAAAGGACACCGATATCCACGAAAACATCGAACCGTTGGATCTCAACCTCCTGCTCGATTGCGTCACCGAGCCGTATCTGGCGCCTGGCGGCAATGGACG CGTTACGGTCCAAGGTCGCGCTCGGGCACCCTATGCCGGCAAGCCGCTGGCACTGAAACGCTGCATAGGCAACTTGCTGGATAATGCATTGAAGTATGGC GAGCGCGCCCATCTGCTAATCGAGGACGACAACGGCACCTTCGTGCTGCATGTCGATGATGAAGGCCCTGGCGTACCCGAGGGCTGGCTGAAGCAGGTGT TCGAGCCCAACTTCCGTCTGGCTGCCAAGCAACCCGGCTATGGGCTTGGCCTCGGTATCGCGCGCAACATCGCGCATGCCCATGGTGGTGAGGTCAGCCT GCGCAATCTGCCTGCCGGTGGTTTGCGCGTGACCTTGAGTTTGCCGCGCACGACCGAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGCCCCTCCGCACCAGACGACTCTCTCCACTTGTTACAAAACCCGAGCTTTGTAACGAAACGGTGACCAATCACTATCCCTTCGTTACCCGGCGCGAAGG TTGGCGCGCCTAGAATCGATGCAGCGCAAGCAAAGACTTGCATCGATAACAACAAGAAAAGGAACCCTCATGAACGCGATTCATCGTTTAGTTACTGCTG TTTCCCTTGTTTCTCTCGTTCCGTTTGCCCAGGCCGGCGAAGTTGAAGTTCTGCATTGGTGGACATCCGGTGGCGAAAAGCGCGCCGCCGATACCTTGCA GCGACTCGTGGAGGAAGAGGGCCACACGTGGAAGGATTTCGCTGTCGCCGGTGGGGGTGGCGAAGCAGCCATGACCGTCCTCAAGACCCGTGCCGTATCC GGCAACGCACCCGCCGCCGCCCAGATCAAAGGCCCCGACATCCAAGAATGGGGTGAACTAGGGCTGCTGACCGACCTCAACGATGTCGCTGAAAAAGCCA
|
|
| Amino Acid Sequence |
>histidine kinase
MTRSVKRRWLPVPRSLLGRMLFLTLLVVLMAQALSSFIWVSQLRASQMEGLLTSARSLAHSMSASVSYFRSLPLGYRPLVLDQLRSMGGTRFFVSLNDKP LEMQILPPTERKQAVLAEVDEVLRERLGKDVDMSVSFVSPDDLRIFNGGLKLDELPRSWAHYALSLEPLNPPVLVTQIQIAPNEWLYLASLMPAPYVSLE DEGIPRQQLWFIFLTSSFLLLFIGILVHWQSRPLKQLAQAAREMSLGSEVELLPEAGGSEVVEVSRAFNSMRERIGRYLTERSQLFSAISHDLRTPITRL RLRVELLEDEALQRKFSRDLDELELLVKGALQCVKDTDIHENIEPLDLNLLLDCVTEPYLAPGGNGRVTVQGRARAPYAGKPLALKRCIGNLLDNALKYG ERAHLLIEDDNGTFVLHVDDEGPGVPEGWLKQVFEPNFRLAAKQPGYGLGLGIARNIAHAHGGEVSLRNLPAGGLRVTLSLPRTTE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|