Pseudomonas sp. 10B238, RT21_RS17350

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 10B238 scaffold11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GGTAGCGGTCGCGAAAGGTGCGCAGTACGGCTGGCAGCAGATTACCGGCGAAGGACGGCATCGAGGCCAGCGTCACCCTGCCCTGTTTCAAGGTGAAACG CTGGCGCAGCTCGTCCTCGGCGTTGTCCCAGTCGGCGAGCAACCGACGCGCCAGGGGCAGCAGCGCCTCGCCTTCGGGCGTCAGACTGACGGCCCGCGTG GTACGGCTGAACAGGCGACCTCCGAGCCCGTCCTCCAGCGCCTTGATGGTCAGGCTCAGCGCCGATTGCGACAGGTGCAGCCGCTCGCAGGCCTGAGCGA AGCTCAGGGTGTGGGCCACAGCGAGAAACGCACGGAGTTGTTTGACGGTCATCGAATCGGATCCGGGAGAGCGCATGACGGCGCTTTGTTTTGTTTTATC AATCAATCGCGCTTAAAAATCAACTTAACAAATCCGTCACACAAGGGAACACTCGATTGCAGCTCACCAAAAACAACCCAACAACAAAAAGGAATCGTTT
DNA Sequence for Gene
>RT21_RS17350
ATGGCTGGTTTCGACAAGCGCGTGAATTCCTATGCCGAGGCGCTCGACGGGCTCGAGGACGGCATGACCGTTCTGGCCGGTGGCTTCGGTCTGTGCGGCA TCCCCGAGAACCTGATCGCCGAGATCAAGCGCAAGGGCACCCGGGACCTCACCGTGGTTTCCAACAACTGCGGCGTCGACGGCTTCGGCCTGGGTGTGCT GCTGGAGGACCGGCAGATCCGCAAGATGATCGCCTCCTACGTGGGCGAAAACGCGCTGTTCGAAAAGCAGCTGCTGGATGGCGAGCTGGAGGTCGAACTG ACGCCTCAGGGCACGCTGGCTGAAAAGATGCGCGCAGGCGGCGCCGGCATTCCCGCCTTCTACACCGCTACCGGATACGGCACCCCCATCGCCGATGGCA AGGATGTGCGTGAATTCAACGGCCGTCCCCACATCCTCGAGCACGCCATCACCGGCGACTTCGCCATCGTCAAAGGCTGGAAGGCCGACCGCTACGGCAA CGTCATCTACCGCCACACCGCGCAGAACTTCAACCCGCTAGCGGCCGCCGCCGGCAAGGTCACGGTCGTCGAGGTCGAGGAAATCGTCGAGCCCGGTGAG ATCGACCCCACCCAGATCCACACGCCCGGCATCTATGTCGACCGCATCATCTGCGGCACCTTCGAGAAGCGCATCGAAAAGCGCACCGTCCGCACCTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCAAAAGAATAAGAGGAATCGACGATGGCACTTTCCCGTGAACAAATGGCCCAGCGCGTCGCCCGTGAGCTGCAGGACGGCTTCTACGTGAACCTCGGCA TCGGCATCCCGACCCTGGTCGCCAATTACGTGCCCGAGGGCATGGAAGTAATGCTGCAATCGGAGAACGGCCTGCTCGGCATGGGCGCGTTTCCCACAGA AGACGAACTCGATGCCGACATGATCAACGCCGGCAAACAGACCGTCACCGCACGCGTCGGCGCCTCCATTTTCAACTCCGCTGAATCCTTCGCGATGATC CGCGGCGGGCATATCGACCTCACCGTGCTCGGCGCCTTCGAGGTCGACGTGCAGGGCAACATCGCGTCCTGGATGATCCCCGGCAAGCTGGTCAAAGGCA TGGGCGGCGCGATGGACCTGGTCGCCGGCGCCGAGAACATCATCGTACTGATGACGCACGCCTCCAAGGATGGCGAGTCCAAGCTGCTGCCCAAGTGCAC
Amino Acid Sequence
>succinyl-CoA:3-ketoacid-CoA transferase
MAGFDKRVNSYAEALDGLEDGMTVLAGGFGLCGIPENLIAEIKRKGTRDLTVVSNNCGVDGFGLGVLLEDRQIRKMIASYVGENALFEKQLLDGELEVEL TPQGTLAEKMRAGGAGIPAFYTATGYGTPIADGKDVREFNGRPHILEHAITGDFAIVKGWKADRYGNVIYRHTAQNFNPLAAAAGKVTVVEVEEIVEPGE IDPTQIHTPGIYVDRIICGTFEKRIEKRTVRT
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site