Pseudomonas sp. 10B238, RT21_RS16715
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAGACAAATAACGCTCGGTTAAGAAATGTAGTGCTTACCAAAGCTCACTACAAAAACATTTGACGAACCATTTTAGCCGGAGCATCATGGCCCCGCTCC CGCTAACCAGAGACTCTGAAAGGGTCTCCGGATCGCGCTCAGCCAACCAGCAGAGGCGTTCCGTGACTGTACTGCCCACAAGGCGGACTGACGAGGTTGC GACTGGAACGAGTCGTCCTGAGGGACGGGGAAGCGATTAACGCATCAGCTCGAGACATAAGTTCGCTGATCCACTCAACGGCCCCGCGTCGCTGTGTGTT GGAATGCCACGATCATTCCACAGCTAACCGAATCCTCTTGCGGTCGTAACTGCATACCCTCCTCCTCTTGGTTCAATCCTCGTCTCGGTCGATATTTCGA CGCTCTGCCACGTGTTGCCCGCTTCATCAGCGCAAGCACGTAGGTTTCAGTGGGAAAAGTCGGTGCTCAACCAAACACGAATTTCTTTGAAGGATTGACC
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| DNA Sequence for Gene |
>RT21_RS16715
ATGTCAGCTTATCAAAACGACATCAAGGCCGTTGCCGCTCTGAAAGAAGCAGCTGGAAGCAGCTGGAGCGCGATTAACCCCGAATCCGTAGCACGTATGC GTACACAGAACCGCTTCAAGACCGGTCTGGAAATCGCGCAGTACACTGCCGACATCATGCGCAAGGACATGGCTGAGTACGACGCCGATACGTCCGCCTA CACCCAGTCGCTAGGCTGCTGGCATGGCTTCATCGGTCAGCAGAAACTGATCTCCATCAAGAAGCACCTGAAGACCACCAATAAGCGCTACCTCTACCTG TCGGGCTGGATGGTTGCCGCGCTGCGTTCCGAGTTCGGCCCGCTGCCCGACCAGTCGATGCACGAGAAGACTGCCGTCTCCGACCTGATCGAAGAGCTGT ATACCTTCCTGCGCCAGGCCGACAGCCGCGAGTTGGACCTGCTGTTCACCGCTTTGGACGCCGCTCGCGAAGCCGGCGACACTGCCAAGGCCGCCGAGAT CCAGTCGCAGATCGATAACTACGAAACCCACATCGTCCCGATCATTGCCGACATTGACGCTGGTTTCGGTAACCCGGAAGCCACCTACCTGCTGGCCAAG CGCATGATCGAAGCCGGCGCATGCTGCATCCAGATCGAGAACCAGGTTTCCGATGAGAAGCAGTGCGGACACCAGGACGGCAAGGTAACCGTTCCTCATG CCGACTTCCTGGCCAAGATTGCCGCCGTCCGCTATGCATTTCTCGAGCTGGGCATCGACAACGGGGTCATCGTTGCGCGTACCGACTCTCTGGGCGCCGG TCTGACCAAGCAGATCGCAGTGACCAAAGAGCCGGGCGACCTGGGTGACCTGTACAACTCCTTCCTTGACTGCGAAGAGATCACCGAAGCCGACCTCGGC AACGGCGACGTTGTGATCAAGCGTGAAGGCAAACTGCTGCGTCCTAAGCGCCTGCCGAGCAACCTGTTCCAGTTCCGCAAAGGCACCGGCGAAGCGCGCT GCGTCCTCGACTGCATCACTTCGCTGCAGAACGGCGCGGACCTGCTTTGGATCGAGACTGAGAAGCCTCATGTTGGTCAGATCGCAGCCATGGTTGACGA GATCCGCAAAGAGATCCCGAACGCCAAGCTGGTCTACAACAACAGCCCGTCCTTCAACTGGACCCTCAACTTCCGCCAGCAGGTGTTCGATGCATTCGCT GCCGAAGGCAAAGATGTTTCCGCCTACGATCGCGCCAAGCTGATGAGCGTCGAGTACGACGAAACCGAACTGGCTCAAGTTGCCGACGAGAAGATCCGTA CCTTCCAGAAGGATGGGTCCGCTCATGCTGGTATCTTCCACCACCTGATTACCCTGCCGACTTACCACACTGCCGCACTGTCGACCGACAACCTGGCAAA AGGGTACTTCGCTGATCAGGGCATGCTGGCCTACGTCAAAGGTGTACAGCGTGAAGAGCTGCGTCAGGGTATCGCCTGCGTCAAGCATCAGAACATGGCT GGCTCCGACATCGGCGACAACCACAAGGAGTACTTCGCTGGCGAAGCGGCTCTGAAGGCAAGCGGTAAAGACAACACCATGAACCAGTTCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAACTGAATATGGCCCAGGCGCCGCCTGGGTCAGTGGTGTAACAGATGTCTTGGCATCTGCATAAAAGCTGCCCCTATATGGAGCAGCTTTTTTTTTGTG TACGACGCGCACACGAGACCTAGCTAACCGCCGCCCCTCCTCTCGCACCGTCCCTGGGCAGCCCCCGCCCAGACAGAGCACTGCCGACAAGCCGAACAGG CCTTCTGTACTAATCGCGGCGCTCACAACTTGCACGACAGCGTGGAGATCTTTAGACGATCTCAGTAGGCATGCTCGCCGCCCCTGCTCACAGTGTTATG GAGGGCTGTGATGTTGCGCACGACGGCGCTGCATGCCAACAAGCTGGAGAGCCAGCGTGAACGCTGTATCAGCCAGATGACAGGCATATCTGATCTCGCA TGCAAAGCCCACCGATAGGTAGACCTTCAGGTCTACAAGGGACGTAGCTAAAGCAAAAAAAATCCGATGCCAGAATCTGGCATCGGATTTTTTGAAAAGC
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNDIKAVAALKEAAGSSWSAINPESVARMRTQNRFKTGLEIAQYTADIMRKDMAEYDADTSAYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSEFGPLPDQSMHEKTAVSDLIEELYTFLRQADSRELDLLFTALDAAREAGDTAKAAEIQSQIDNYETHIVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHADFLAKIAAVRYAFLELGIDNGVIVARTDSLGAGLTKQIAVTKEPGDLGDLYNSFLDCEEITEADLG NGDVVIKREGKLLRPKRLPSNLFQFRKGTGEARCVLDCITSLQNGADLLWIETEKPHVGQIAAMVDEIRKEIPNAKLVYNNSPSFNWTLNFRQQVFDAFA AEGKDVSAYDRAKLMSVEYDETELAQVADEKIRTFQKDGSAHAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQREELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKASGKDNTMNQFH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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