Pseudomonas sp. 10B238, RT21_RS16445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold10, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGCACCAACCAGAACCTGCCGCGCCAGCTGCGCCTGGGCGATATCTGTCTACCCAGCGAAGACACGCCGGAGTTCCTGACCTTCCGCAACATCAGCG CCGTGACGCCGAGCTATGCGCCGCCGCTGCATCGTGACTTCCTCTGGAAGTTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCAACGTCGAGGC GCTCAAGGTGATCCTCGAGACCTATGACCTGCCGCGCTATTACGACCAGCACGCGGAGAAGGTCAGCAAGCGCCTGCTCGGCGGCCTTAAGCAGATCGGC CATCAGCACGTTGACCGGCTGCACCGCGGCCTGCCGGTGCGCGGCGTGCGTACCGAACTGGTCATGGACCCGGAGGGCTATCTGGGCGAGGGAGACCTGT TCCTTTTCGCCTCGATTCTCAATGAATTCTTTGCGCTGTACGCGAGCCTCAATTCGTATCACGAGTTGCGCGTCAAGAGCACACAGGGAGAGGTGTACCA
|
|
| DNA Sequence for Gene |
>RT21_RS16445
ATGGACGCCACGTATGGGGCAGCAGCCCCTGCTCTAAACCGGATCAGCCGGGGCATCCGCGAGTACAGCCTGTTCCAGGGTGTGCTACTGGTGATGGACC GTCTGAAAGCTGCGCATCCGGAGCTGGACGAAGAGGCGCTCTACGAGCACCTCGAATTCCAGGCCAACCCGAGCCTGGGCTTTCCCGGCAGCGACGTCGA CCGCGTGCACTTTTTCGAAGAGCATGGGCAACTGCGCGCGCAACTGCGGATCAACCTGGTCAGCCTCTTCGGGGCCGGCTCGCCACTGCCTGCCTTCTAT GGTGAGCAAGCCCTCGGCGACAGCGCCGAAGGCAACCCGACACGCGAATTTCTGGACCTGTTCAACAATCGTCTGCAGCGCCTGATTCTGCCTATCTGGC AGAAGTACCGTTACCGCGCACGTTTCAGCACTGGCGCACGCGACCCGCTGTCCGAACAGCTGTTCGCCCTCATCGGCCTCGGCGGCGAGCAGATCCGTGC CGCCTCGGAGTTGAACTGGAAGCGCCTACTGCCGTACCTGGGGCTGCTCAGCCTGCGCGCGCACTCGGCGGCTTTGATCGAGTCGGTACTGCGCTACTAC TTTAAGCACGCCGACTTGCGCATCGAGCAGTGCCTCGAACGCCAGGTCGAGATTCTCGCTGAGCAGCAGAACCGCCTCGGCCGAGCCAACAGCCAGCTCG GCGAGAGCCTGGTGCTGGGCGAGCGGGTGCGCGACCGTGGCGGAAAGTTCCGCATTCACATCCGGCAACTCAGTTGGGGCCGCTTTCACGAATTTCTGCC GGTCGGCACCGGCTATCAACCGCTATGTGCACTGGTGCGCTTCACCCTGCGCGATCCGCTGGACTATGACATCCGCCTGCAATTGCGCCAGGACGATATT CGTGACCTGCGCATCGGCGCAGAGAACACCTGCCGCCTCGGCTGGACCAGCTGGCTCGGCAGCGAGCGCGCCGACGGCATGGTCACCCTGGGCAGCCAGA CTCATTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAAGATGAAGATGATCAACGTAGACCTTCAACAACTGGTCCAGGCTCTGGATGCGCAGACCAAGCATGATCTGGAAACCGCGGCGGAGCGCTGCGTGGT CCGTGGCGGCAACAAGATACTCGTCGAAGACCTGCTGCTCGGCTTGCTGGAGCGCCCCGAAGGCCTGCTGAACCGCGCGCTGCTGGACGCCGATGTCGAA CCCGGCACGCTGGCCCAGGCGCTGCAACCACGTGGCGAGCACAGCGAGTCGCGCAATCCGGTGTTTTCCGCGGAGCTGGTGCAGTGGCTGCAGGATGCGC TGCTGGTCGGCAACCTCGAGCTCGGCCAGAGCCAGAGCCAGATCGACCAGGCCGCGCTGATCCTGGCGCTGTTGCGCAACCCGATGCGCTACGCAGGCAG TCACTACCAACCGTTGCTGGCCAGGCTCAACGCCGACCGGCTGCGCGAGTTCGCCTTGGCCCAACAGCCGGCGCAACAGGCAGCAGGTGCCACCGCTCCT
|
|
| Amino Acid Sequence |
>type VI secretion protein
MDATYGAAAPALNRISRGIREYSLFQGVLLVMDRLKAAHPELDEEALYEHLEFQANPSLGFPGSDVDRVHFFEEHGQLRAQLRINLVSLFGAGSPLPAFY GEQALGDSAEGNPTREFLDLFNNRLQRLILPIWQKYRYRARFSTGARDPLSEQLFALIGLGGEQIRAASELNWKRLLPYLGLLSLRAHSAALIESVLRYY FKHADLRIEQCLERQVEILAEQQNRLGRANSQLGESLVLGERVRDRGGKFRIHIRQLSWGRFHEFLPVGTGYQPLCALVRFTLRDPLDYDIRLQLRQDDI RDLRIGAENTCRLGWTSWLGSERADGMVTLGSQTH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|