Pseudomonas sp. 10B238, RT21_RS16400

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. 10B238 scaffold10, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGCTCAAGCAGAGCGTCGGCGGCCTTCAACAGGCGCTGCGCACCCGGGGCGAGCTGAAAAACGAGATGCGCCTGTCAGTGACTACCGTGCAGAGTGCCG GCAACAACCCGCTCAAGCACAGCATCGACAGCGGGGAAGCCCTGAACCTTCTGCTGCGCGGCGGCAAATCGGGGCAGCTACCTGCGGAACAGGCCATGGG GCGCGCTTACCGTGATCTTCAGGCACACCAAGTGGCCATGCTGGCCGCCAGTCGCGCTGCCATCAAAGGCATGCTGGAGCAATTGTCCCCAGATCAGCTG GCGCTGCGCTTTGAGCGTGACAACAAGCCTCTTATTTCCACATCCGGTAACCGCTGGCGTGCCTATAAGCGGCTGCATTCGGCGATGCAGCGTGACGACG ATTGGGGCGAACGTTTATTTGCTCGAGACTTCGCCCAGGCTTACGAGGAGCAGGCCCGCCTGATCGCCACGCTCAACACAGACCTTCAAGGATGATGTTC
DNA Sequence for Gene
>RT21_RS16400
ATGTCACGCTTTTTACCCGCCGCAGTGCTGGCGGCGCTTGCCGTTCTGAGCGGCTGCTCTGCCCTCTCGCCCAACTCAGACCTGACCAAGCTGGACCTGT CGCTGCAGGGGAGCGACAGGCTCAACCCCGACCTTAACGGCCGCCCGTCACCCATCGTGATCCGCCTGTTGGAGCTCAAGCATTCGGTGGCCTTCGAGAA CGCCGACTTCTTTTCGCTCTACCAGCGACCCAAGGAAGCCTTGTCCCCGGACATGGTGGTTCAGGAAGAGCTGGAACTGCGGCCAGGGGAGCAGCGCGAC CTCAAGCTGTTTGTTCAGGACGGTAGCCGCTATGTCGGCGTGATGGCCGCTTATCGCGACCTGCCCGAATCGAGCTGGCGTTTCGTTATCCCGCTGCAAC ACAAGGCGCAGAACCGCATTGAGCTGATGCTCGACGAGCACGGCATCAAGGCCATCGATCCGCTCGCGAAGGGAGACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGATGAGCATGAACAAAGTCATCTGGCAGGAAGGCATGCTGTTGCGTCCACAGCATTTCCAGCAAAGCGATCGTTACTACGACGCGCAACTCAAGCTGC GGACACAGAAGTTAGGCCATTACGCCTGGGGCTTCTTCGGGCTGGAGATCGACCGTCAGTTCCTCAACATGGGCAAGCTGGTGCTTAGCCAAGCGAGTGG TCTACTTCCTGATGGCAGCCTGTTCGAGATTGGCGCCGAGCGTGAGCCACTGGCTCTGGACGTGCCGCCCAACACTGGCAATACGCCTGTGTACCTGGCG TTACCGCTGGTGACCGGCAATCACATCGAGAGCCGCCGTCCAGAACAGAAGGACGTACTGGCGCGCTACACCGCTTTCGACGAAGAGGTCACTGACTCCA ACGCTGGCGACAGCAGCAGCAGCCAGGTCAGCACTGGGCGACCGGACTTTCGGCTGTTGCTGGGTGAGCAGCAAAGCGACCAGGCTTACGTGAAACTCAA
Amino Acid Sequence
>type VI secretion protein
MSRFLPAAVLAALAVLSGCSALSPNSDLTKLDLSLQGSDRLNPDLNGRPSPIVIRLLELKHSVAFENADFFSLYQRPKEALSPDMVVQEELELRPGEQRD LKLFVQDGSRYVGVMAAYRDLPESSWRFVIPLQHKAQNRIELMLDEHGIKAIDPLAKGD
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site