Pseudomonas sp. 10B238, RT21_RS14560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGGCTACTGACGGATCAGGATGGCGAAGTCAGCATCGTCCTTGGCCAACACCACATTCGAGCCACTACAGGGGAATTCACCTTTACCTCTAAACTCGTT GACGGAAAATTTCCTGACTACGAGCGCGTTCTGCCCCGTGGCGGCGACAAGCTGGTGGTTGGTGAACGTCAGACACTGCGCGAGGCGTTCAGCCGTACGG CCATTCTTTCCAATGAAAAATATCGCGGCATTCGGCTGCAACTGGAAACTGGCCTGTTGAAAATCCAGGCGAATAACCCTGAGCAGGAAGAAGCGGAAGA AGAAGTCGCGGTGGACTATACCGGCGGGGCTTTGGAGATCGGTTTCAACGTCAGCTATTTGCTTGATGTGCTGAGCGTCATGACCACCGATCAGGTCCGG CTAATTCTGTCCGATGCGAATAGTAGTGCTTTGGTTCAGGAATACGATAACGACGACTCGGCTTACGTCGTTATGCCGATGCGCCTGTAATCCACATTGA
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| DNA Sequence for Gene |
>RT21_RS14560
ATGTCCCTTAGCCGCATCTCCGTCACCGGCATACGTAACCTCCAGCCGGTGACGTTAAACCCCTCCCCCCGGATCAACATCCTCTACGGTGATAACGGTA GCGGAAAAACCAGTTTTCTCGAGGCGATCCATCTCCTCGGAATGGCGCGCTCGTTCCGCAGCACGCGTCTGACGCCGGTCATAAGCCACGAGCATTCCAG TTGCACGGTCTTTGGTCAGGTCGAATTGGCTGATGAGCAGTCAGCCGCCCTCGGCATCTCTCGAGATCGCAGCGGCGACGTACGCATCAGAATCAATGGC CAGAGCGTTCGAAGCGCAGCGGAACTCGCTGACACGTTACCGTTGCAGCTGATCAATCCGGACAGTTTTCGCTTGCTCGAAGGTGCACCCAAGCTTCGCC GGCAGTTTCTGGATTGGGGGGTGTTCCACGTGGAACCCCTATTCCTCCATGCTTGGCAGCGCTTGCAGCAGGCCTTGAGGCAACGGAACTCGTGGCTGCG TCATGGTACACTTGACTCCGCGTCTCAGGCGGCTTGGAGCCGCGAGCTTAGCGCTGCGAGTGAGGAAATAGACGGGTACAGGCGGGCCTACATTCAAGCG CTGAAACCAATATTCGAGGTCACCTTGGCCGCGCTTTTGGATCTTCACGGTTTCCAGTTGAGTTATTACCGTGGCTGGGACAAAGGGCGTTCCCTGGCTG AGGTGTTGTCGTTGTCCATCGAACGCGACAGGCTCATGGGGCATACCCAGGCGGGTCCTCAGCGGGCTGACCTCCGATTGCGGGTAGCCAACCATAACGC TGCGGAAACCTTATCTCGTGGCCAGCAGAAACTGGTTGTGTGCGCGTTACGTATTGCGCAGGGCCATTTGGTCAGTGAAGCCAAACGAGGCCAGTGTATT TATCTGGTTGATGACCTACCGTCCGAGTTGGACGATCAGCACCGGCTGGCATTGTGCCGGTTGCTGGAACAACTGAATTGCCAGGTTTTTATCACCTGCG TTGATTCGAACGTATTGCGAGAAGGTTGGCGCCAAGACACGCCAGTCTCAATGTTTCACGTGGAACATGGTGCGATAGCCCAGGACCACGGCCCCTCGGG AGTGAAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAAAACCACACGTACGATTCGTCCAGTATCAAGGTCCTCAAGGGCCTTGATGCAGTACGTAAGCGCCCCGGTATGTATATCGGCGATACGGACGACGG CACTGGTCTGCACCATATGGTCTTCGAAGTCGTGGATAACTCGATCGACGAAGCGCTGGCAGGTCATTGCAACGATATATCAATCACCATACATGTTGAT GAATCCATCAGCGTTCGTGACAACGGCCGTGGCATTCCAGTAGATATCCACGAAGAAGGTGTATCTGCAGCAGAGGTCATCATGACCGTCCTGCATGCTG GCGGTAAGTTCGACGACAATTCCTATAAGGTTTCCGGCGGTCTGCATGGCGTGGGTGTTTCGGTGGTGAACGCCTTGTCTGAGGAACTGATCCTGACCAT TCGCCGCGAAGGAAAGGTATGGGAACAGATCTATCGTCACGGTGTACCGCAAGCGCCGCTCGCTGCAGTTGGTGAAACCGAGGATTCGGGCACCGAAATC
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| Amino Acid Sequence |
>DNA recombination protein RecF
MSLSRISVTGIRNLQPVTLNPSPRINILYGDNGSGKTSFLEAIHLLGMARSFRSTRLTPVISHEHSSCTVFGQVELADEQSAALGISRDRSGDVRIRING QSVRSAAELADTLPLQLINPDSFRLLEGAPKLRRQFLDWGVFHVEPLFLHAWQRLQQALRQRNSWLRHGTLDSASQAAWSRELSAASEEIDGYRRAYIQA LKPIFEVTLAALLDLHGFQLSYYRGWDKGRSLAEVLSLSIERDRLMGHTQAGPQRADLRLRVANHNAAETLSRGQQKLVVCALRIAQGHLVSEAKRGQCI YLVDDLPSELDDQHRLALCRLLEQLNCQVFITCVDSNVLREGWRQDTPVSMFHVEHGAIAQDHGPSGVKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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