Pseudomonas sp. 10B238, RT21_RS13865

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.1190.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.40.1190.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016881 acid-amino acid ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02020
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009252 peptidoglycan biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02020
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0071555 cell wall organization
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_02020
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01081 JCVI: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase IPR005757 Murein peptide ligase 2 448 0.0
Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. IPR005757 Murein peptide ligase 1 449 60.216095
Pfam PF02875 Mur ligase family, glutamate ligase domain IPR004101 Mur ligase, C-terminal 311 359 1.1E-10
Gene3D G3DSA:3.90.190.20 - IPR036615 Mur ligase, C-terminal domain superfamily 314 449 4.4E-38
Gene3D G3DSA:3.40.50.720 - - - 1 90 2.0E-34
SUPERFAMILY SSF51984 MurCD N-terminal domain - - 1 90 1.96E-23
PANTHER PTHR43445 UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED - - 2 448 5.0E-108
Pfam PF01225 Mur ligase family, catalytic domain IPR000713 Mur ligase, N-terminal catalytic domain 2 100 2.2E-22
SUPERFAMILY SSF53244 MurD-like peptide ligases, peptide-binding domain IPR036615 Mur ligase, C-terminal domain superfamily 311 448 5.36E-36
FunFam G3DSA:3.40.50.720:FF:000161 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase - - 1 90 1.7E-55
Pfam PF08245 Mur ligase middle domain IPR013221 Mur ligase, central 109 291 5.1E-20
SUPERFAMILY SSF53623 MurD-like peptide ligases, catalytic domain IPR036565 Mur-like, catalytic domain superfamily 94 308 6.15E-50
Gene3D G3DSA:3.40.1190.10 - IPR036565 Mur-like, catalytic domain superfamily 91 313 1.4E-66

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.