Pseudomonas sp. 10B238, RT21_RS12705
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCAAATCCTTGCGGAGATTGGCGGTGGTGGCGGCCCATCACCAGCAGATCGGTTTCCAGCCCAGCGGCCTGGGTAAGAATTTCTTCAGCGGCGCGGCCCT TACGAATCCAGGGCTGCAGCTGGGCGAGGCCGTGGCGCTCAAGCGTTGTCTGCAGATAGCTCTGTGCATTTCGCTGCTCCGCTGCCCCTGGGTTGCCGGT CAGAACGTGTAAGACGCTCAGTCGTGCCCCGGTCTGCTGCGCCAACTGTGCGGCGCGGCCCAGGGCCAGGTCGGCATCGGGACTGAGATCGTGGGCGACA AGAATGTGCTGAACCATGAAGGCCTCGCGTTTTGCTGGGCGAAATACCTGCAGTATGCCGGCCAGATCCAGGCGTTGTCCTGATCGGGAGCAGGCAGCAG CCGTGCGTACAGTAGGAGGCTGGCCGCTGCTTTGATCTGGAACGCTTTTTTCGTCGGGCTGCTAACGCTATGCTGGCGGCCATTCAAGCAGGAGCGAGTG
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| DNA Sequence for Gene |
>RT21_RS12705
ATGAGCAAGGTCAGTGTGCTGGTGGTGGATGACGCGCCCTTCATTCGGGATCTGATCAAGAAGGGGTTGCGCAGCCACTTCCCGGGGATTCGTATCGAGG ACGCTGTGAACGGGCGCAAGGCCCAGCAGATGCTCGATCGGGATTCGTTCGACCTCATTCTTTGTGATTGGGAAATGCCGGAAATGTCCGGCCTTGAACT GCTGACCTGGTGCCGTGCCCAGGAAAAGCTCAAGACCACCCCGTTCATCATGGTCACCAGCCGTGGCGACAAGGAGAACGTGGTCCAGGCGATCCAATCA GGTGTGTCCGATTTCATCGGCAAGCCATTCTCCAACGAACAGTTGACTACCAAGGTACGCAAGGCGCTCGGACGGGCCGGCAAGCTCGACGCGTTGGCCG CCAGCGCACCGGCACGGCCGACCAATACCGGAATGGCGAACGATTCCCTGGCTGCGCTGACGGGCGGTAAAGCTGAAGTTGTCAAACCGGCTTCTGCGCC GGTCGCCTCGCCGGCACCCGGGTTCGCCGCGCCGCTCGCTCAGCCGGGCGCAGCCAAACCGACTGCGGCCAGCGGCGGCCGCGGCCAGGGCCAGTTGCGT TTGCCGAGCGGAACGCTTGCCTGTGTAATCAAGGCCCTCAGCCTCAAAGAGGGGCTGCTGGTGGTCAAGCGCGGCGAGACGCTGCCGCAAGTGCTAGAAA GTGCCGTGCTTGATCTGGAGCAGGGCGAAGGCGGCGAGGTGGCCCGCCTCAACGGTTACCTTCACGCCGTCGCGGCGCTGGAGCCGAAGCCGGACAGTGA ATGGTTGCAGCTGACCTTCCGCTTCGTCGATCGTGATCCGCAGAAGCTCGATTATCTGTCACGCCTCATCGCCCGCGGGACAGCACAACGGCACTTCGTC CCAGGCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATAGAGACGAGCACCGCTTAGGTCTGCAAATAGAAGCTCCGGTCATCTGAAATTTGCAGTGCCGCCGGAACAATTTCACAGGCCGACGGTCGGTGGCTCG CGTGCGCACCGTTGCGCTGCTAGTCTGCAGCCCTCTTACTACATAACCCTATGAAGTCTGCCGTTATGTCGTGGCGCATCATTCTCGTTCTCGGGTCGTT CTGGCTGGCCTCGCCCGCGTCGGCCCTGACCATCTACAAATACACTGACGCCAACGGCGTGGTCACTTACAGCGACCAGGCTGCACCAGGCGCGAGGTTA TTCACCTTCAGCGATCGCATGGTCGAGAAACTCGACAACCAGGTAAAGCTGGAAACCCGCAAGCATGCCGCGGGCGAGACGCTGCTGGTTCGCAACGATC TGTTTGCGCCCGTGGATATTGAGCTCAAGCTGACCGGCGTACAGAATGCCGTCGGCGCCCCGGATAAACCGATCCGTTGGGTACTGCCGCCGCGTAGCCA
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| Amino Acid Sequence |
>chemotaxis protein CheY
MSKVSVLVVDDAPFIRDLIKKGLRSHFPGIRIEDAVNGRKAQQMLDRDSFDLILCDWEMPEMSGLELLTWCRAQEKLKTTPFIMVTSRGDKENVVQAIQS GVSDFIGKPFSNEQLTTKVRKALGRAGKLDALAASAPARPTNTGMANDSLAALTGGKAEVVKPASAPVASPAPGFAAPLAQPGAAKPTAASGGRGQGQLR LPSGTLACVIKALSLKEGLLVVKRGETLPQVLESAVLDLEQGEGGEVARLNGYLHAVAALEPKPDSEWLQLTFRFVDRDPQKLDYLSRLIARGTAQRHFV PGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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