Pseudomonas sp. 10B238, RT21_RS12515
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAATGGACGGGACGGCTGGCACCGAAACGCAGGAAAACTTCTCCGCGTCTGCTTAAGGTTGGTAGCCTGGAGCTGCTTTCCTGTTTTACCGCTTCCCTA TTGGCTGGTGATTTTTTAGACTATCCCGTCCGCTCGCCCATTCGGGCACGCTTTACCGTTATTGATGAGGAACACCATGGCCCGCGTTACCGTTGAAGAC TGCCTGGACAACGTAGATAACCGCTTCGAGCTGGTCATGCTCGCTACCAAGCGCTCGCGCCAACTGGCCACCGGTGGCAAAGAGCCGAAGGTAGCTTGGG AAAATGACAAGCCGACCGTCGTGGCCCTGCGTGAAATCGCCTCAGGCCTGGTGGATTACGATGTAATCGCTCAGGACGAAATTGTCGATGACGAGCCACT GTTCGTCCAGTACGAGGAAGAGCCCAACGAGGCCCTCTGATTAAATGCCAGGTCGAAGTCGAACCGCAGCCATAGCGCCCCATCGGCAAGGAGCAATCCC
|
|
| DNA Sequence for Gene |
>RT21_RS12515
TTGCCAGCCATAGACGCTCTTGCTGATCGCCTGTCGACCTATCTCGACGCTGACCAAGTCAATCTGGTCCGTCGTGCCTATTTCTACGCCGAGCAGGCCC ATGACGGCCAGCGTCGGCGCAGCGGTGAAGCCTACGTCACCCACCCCCTCGCGGTAGCCAACATCCTCGCTGATATGCACATGGACCATCAGAGCCTGAT GGCCGCCATGCTGCATGACGTCATCGAGGACACCGGTATCGCCAAGGAAGCGCTCACCGCGCAATTTGGCGAAACTGTCGCCGAGTTGGTGGATGGGGTC AGCAAACTGACCCAGATGAAGTTCGAAACCAAGGCCGAAGCCCAGGCGGAAAACTTTCAGAAGATGGCCATGGCCATGGCGCGCGACATTCGCGTGATCC TGGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACACTTGAAGTGCTGGCTGGTGAGAAACGCCGGCGCATCGCCAAGGAAACTCTGGAGATCTACGC CCCCATCGCTAATCGGCTGGGCATGCATGCCATGCGCATCGAGTTCGAGGATCTGGGCTTCAAAGCCATGCATCCGATGCGTTCGGAGCGTATCCGCGCT GCAGTTCGCCGCGCACGTGGCAACCGCAATGAAATCGTCGACAAGATTGAGCAGTCACTCGTCCACTGCCTGGAACGTGACGACCTGCAAGGTGAAGTAG TCGGACGAGAAAAACACCTCTATAGCATTTACAAAAAGATGCGCGGCAAGCGAAAGGCGTTCAACGAAATCATGGACGTCTACGCGTTCCGGATCGTCGT CGACAAAGTCGATACCTGCTATCGCGTACTCGGCGCGGTACACAGTCTCTACAAGCCCCTGCCCGGCCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGTTACCAGTCTTTGCATACGACTCTGTTCGGCATGCACGGGGTGCCCATCGAGATCCAGATCCGCACCCGCGAGATGGAAGAGATGGCTAACAACG GCATTGCGGCACACTGGCTGTACAAGTCCAACGGGGAAGAAACCGCGAAAGGCACCCACGCCCGCGCACGGCAGTGGGTCAAAGGCGTGCTGGAACTGCA GGAACGCGCCGGCAATTCCCTTGAGTTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTATGTCTTCACGCCCAAGGGCAGCATCATGGAG CTGCCGAAGGGATCCACCGCGGTGGACTTCGCCTACGCCGTGCACACCGACGTCGGCAACACCTGCATTGCCTGCCGCGTCAATAGGCGCCTGGCGCCGC TCTCGCAGGCGCTGGAAAGCGGTTGTACCGTTGAGATCGTTACCGCTCCGGGCGCACGCCCCAACCCGGCCTGGCTGAACTTCGTGGTCACAGGAAAGGC GCGAACGCACATCCGCCATGCACTGAAGCTGCAGCGTCGCTCGGAGTCGATCAACCTCGGCGAGCGCCTGCTGAACAAGGTGCTCGCCGGTTTTGAAACA AGCCTGGACAAGGTTTCGCCAGAGCGTATCCAGGCGGTGCTCAACGAGTACCACATGGAGGTCATTGAAGACCTTCTCGAGGATATCGGGCTGGGCAATC GCATGGCCTACGTCATTGCCCGACGACTGCTGGCCAGCGAAGGCGAGCAGCCACAAAGCGCTGAAGGACCACTGGCGATTCGTGGCACCGAAGGCCTGGT GCTCAACTACGCCAAGTGTTGCACGCCGATTCCTGGCGATCCCATCGTCGGCCACCTGTCCGCGGGCAAGGGTATGGTGGTGCACCTCGACACGTGCCGG AACATCGCGGACGTGCGGCACAACCCGGATAAATGTATTCAGCTGTCCTGGTCCAAGGATGTCACTGGCGAGTTCAACGTCGAGCTACGCGTTGAGTTGG AGCACCAGCGCGGCCTGATCGCCCTGTTGGCCGGCAGCGTCAATGCGGCGGACGGCAACATCGAAAAGATTGGCATGGACGAGCGCGACGGCCGAATTAG CGTCGTTCAGCTGGTGGTCAGTGTGCATGACCGCGTACATCTGGCGCGTGTGATCAAGAAGCTTCGTGCGATCAAGGGCGTCATGCGCATCACGCGCATG AAAGCCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GTCCACACGGCAACGCACCGGGGCTTTTGCCCGCTCGCTGCAGCCCGTATCCTCTGGGGCCGCACTCTTCTATCGGAGCACCCCATGAGCAAGACCGTGA TCCACAGCGACAACGCACCCGCCGCCATTGGCACCTATTCCCAAGCAATCAAGGCTGGCAATACCGTCTATATGTCCGGTCAGATTCCGCTGGACCCGAA GACAATGGAACTGGTGGAAGGCTTCGAAGCACAGACCGTGCAGGTCTTCGAAAATCTCAAGGCCGTCGCCGAAGCTGCTGGCGGTTCGCTCAAGGACATC GTCAAGCTGAACATCTTTCTCACCGACCTCGGCAACTTTGCCACCGTCAACGAGGTCATGAGCCGCTATTTCCAGCAGCCCTACCCCGCCCGTGCAGCCA TTGGCATCGCCGCGCTACCCAAGGCTGCACAAGTTGAAATGGACGCCATCATGGTGCTCGAGTGATACCCAGCTAGCCAATCAGCGGTGCAGGGAACGCT
|
|
| Amino Acid Sequence |
>(p)ppGpp synthetase
MPAIDALADRLSTYLDADQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALTAQFGETVAELVDGV SKLTQMKFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLAGEKRRRIAKETLEIYAPIANRLGMHAMRIEFEDLGFKAMHPMRSERIRA AVRRARGNRNEIVDKIEQSLVHCLERDDLQGEVVGREKHLYSIYKKMRGKRKAFNEIMDVYAFRIVVDKVDTCYRVLGAVHSLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSNGEETAKGTHARARQWVKGVLELQERAGNSLEFIESVKIDLFPDEVYVFTPKGSIME LPKGSTAVDFAYAVHTDVGNTCIACRVNRRLAPLSQALESGCTVEIVTAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESINLGERLLNKVLAGFET SLDKVSPERIQAVLNEYHMEVIEDLLEDIGLGNRMAYVIARRLLASEGEQPQSAEGPLAIRGTEGLVLNYAKCCTPIPGDPIVGHLSAGKGMVVHLDTCR NIADVRHNPDKCIQLSWSKDVTGEFNVELRVELEHQRGLIALLAGSVNAADGNIEKIGMDERDGRISVVQLVVSVHDRVHLARVIKKLRAIKGVMRITRM KA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|