Pseudomonas sp. 10B238, RT21_RS12325
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGACCTTCGCCGCCGCGTAGCAGGCTGCTGACGCGCTCCTTCATCTCGCGTGCGGCCTTGTTGGTGAAGGTCACGGCGACGATGTACTGAGCGCGGAT GCCGCATTGCTGGATCAGGTAGGCGATCTTGCGGGTGATCACGCTGGTCTTGCCGGAGCCGGCGCCGGCGAGCACCAGCATGGGGCCGCCGACGTAGTTC ACGGCTTCCTGCTGCCGGGGATTGAGTCGGGACATCGTCGTTTGGTCTATCGAAACGGGGGCGAGAGTTTAGCAGGGCTATGGCTGTGAATTGGTGCTGT CGACCGGCTGCGGCTACCGGTCGTCGCCAGCGAGGCTGGGTTATCCATTGCAATGCTCTAGTCTATGCGCCGCGGCGCCCGCTTTAGGCTGCTCAGCTTG CCGCCCCGCTTCACACAGGGAGGTGTATCCGTCGAGGTGGCATTGCCATCTTCTGCTCCGTACGAACCGGGGAAACACCGTGACATCTTCTATACAACCC
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| DNA Sequence for Gene |
>RT21_RS12325
ATGCGTCTGGTTCTGCTGGCCGATGTGCCCACGTGGACCGAAGAGCTTCAGGTTGCCCTGTCGTCCGTGCGCGGCCGTCATCGGCTGAGCGTGGCTGAAG ACTGGTCGGCCGCGATTGATCTGCTTGCCGAGTCCGGCCACGCCTTGTTGATTGCCACGCCGGGCTGTCGCCCCGCGTCGGCGCACTTCCCCTGGCCTAC CGTTTTGTTGCTCGAAGACGAGCCCGCGGAGCTGCCGGAAGGTGTCATCGACTGGCTTCCCGGCGCCCGTTTGAGTACCGACATGCTGCGGCGTTGTGTG CGCTATGCCCGCGAACGGTGCAACTTGGAGGGCGCCCTGCAAAGGCTGGCCGTGCAGGACCCGCTGACTGGCATTGCCAATCGCCAAGGCTTTCAGGCAT TGCTTGCATCGCGCCTGGCCGAGCACGAAGGAGAAGGACTGACGCTTGGGTGCCTGGATCTGGATAACTTTCGCCGGGTCAACGATGCTCTGGGGCATCA GGCTGGCGACCGTCTGATTCTGCAAGTCGTGGCGCGCCTGAAGGCACAGCTGGAGGTGGGTGACACCCTGGCCCGCCTGGGTGGCGACGAGTTTGCATTG TTGCTCGATACCGAGCGGCAGCCTGATCGCGCTGATCGGATCGCTGACCGAATTGTCGAGGCACTGGCCGAGCCCTACTGGATTGACGGCGACACCCTGA TGCTCGGCTGCAGTCTTGGGCTGGCGAATGCGAAGGCCGATACGGACCCCGACCAACTGCTCTGGCTGGCGCAGGTGGCCATGCGCCAAGCCAAGGCGAG TCAAGGCTGTTCCTGGTATCTGTACAACGAGCGGGTCAACCGCAGCGCCAGTCACCTTGCTGATCTGGAAGGCGAGTTGCGCCGTGCGCTGCGGCGCGAT GACCTTGAGCTGCACTATCAGCCGCGACTTTGCATCGACACCGGCCGCATCGTTGGTATGGAGGCGCTGGTGCGATGGCCGCATGCCGAGCGTGGGCTTC TCGGGCCAGACGAGTTCATCCCCATGGCCGAAGAAAGCGGCTTGATTGTGCCGCTCGGCTACTGGGTGATCGCGCGGGCGCTGCGCGACATGCAAAGCCT ACGCGAAAGCGGTGCAGGCGAGCTGCATATGGCCGTCAACCTATCGTTCCGCCAGTTTCAGGACAGCCAGTTGCTGGCAACCCTGAAGCGGCTGATCGAG GAACGCGGTGTGGATCCGCATTGGCTGGAGTTCGAACTCACCGAAACCGCAGTGATGCGCCGCAGCGATCAGGTTCGCGGCACCATGAACGCTCTGGCAG CGCTAGGTGTGCGCTTCTCGCTGGATGATTTCGGTACCGGTTTCTCCTCGTTCGTACACCTGAGTCGACTGCCGATCAGTCTGCTCAAGATCGACAAGAG TTTTGTCGGTCAGATGGCGGCGCGCCCGCAGAATGGGCGGCTGGTGCGCGCGATGATCAGCCTCGCACATGACCTGGGTCTAGAGGTGGTAGCCGAAGGG GTGGAGGGCGCCGCTCAGCTCGGTCAGCTGCGTCGCTTCGGAGCCGATCAGGTTCAAGGCTATCTGATCAGCAAGCCGCTGCCGCTTGCGGAGCTCAGGC CCTTTCTCAATCGTGGCCGGACGGCCGAAGCCAGTTGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACGAAGCGCCGGGCTTAGAGCCCGGCGCGTTGTTGCTTAGCGAACCATGTGCAGGAAGTGCATGTGCTTCTCGTACTGGTCCAGGATGTCGCCGATCAC GCCATCACGGCTCCAGCCCATCACGTCATAATTCTGCCCGCCTTCCCTGAGGTGAACCTCGGCGCGGAAGTAGGTCGCCTCGTCAGAATCGCCCTCTTCG GTGGCGACAAAACTCGGCATCGGATAGCCGCGCGGGCGGATCTGGTAGATGAAATCAGGCGCGCCCTCATGGGTGATCTGCAGCCCGGTGCGGTTGTCTT CACCGCCTGTAAGCTCCACGGCGTACCCCTGCTTGCGCAGTTCTTCCGCCACTTCAGCGCACGCGGGCGCCGCGATTGCAACGATGAAGCGCTCCACGTC GCGACGGCGTGGGTACTTGGTCAGGTTCTGCACCCGACGGCGCCAGCCACCTTCAGACTGCGGCGCTGTGGGCGTGGTGCTGACCGTCTGGTAGCGCAAG
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| Amino Acid Sequence |
>diguanylate cyclase
MRLVLLADVPTWTEELQVALSSVRGRHRLSVAEDWSAAIDLLAESGHALLIATPGCRPASAHFPWPTVLLLEDEPAELPEGVIDWLPGARLSTDMLRRCV RYARERCNLEGALQRLAVQDPLTGIANRQGFQALLASRLAEHEGEGLTLGCLDLDNFRRVNDALGHQAGDRLILQVVARLKAQLEVGDTLARLGGDEFAL LLDTERQPDRADRIADRIVEALAEPYWIDGDTLMLGCSLGLANAKADTDPDQLLWLAQVAMRQAKASQGCSWYLYNERVNRSASHLADLEGELRRALRRD DLELHYQPRLCIDTGRIVGMEALVRWPHAERGLLGPDEFIPMAEESGLIVPLGYWVIARALRDMQSLRESGAGELHMAVNLSFRQFQDSQLLATLKRLIE ERGVDPHWLEFELTETAVMRRSDQVRGTMNALAALGVRFSLDDFGTGFSSFVHLSRLPISLLKIDKSFVGQMAARPQNGRLVRAMISLAHDLGLEVVAEG VEGAAQLGQLRRFGADQVQGYLISKPLPLAELRPFLNRGRTAEASC
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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