Pseudomonas sp. 10B238, RT21_RS08055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006355 | regulation of transcription, DNA-templated |
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 426 | 590 | 1.7E-40 |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 428 | 587 | 3.3E-42 |
| PANTHER | PTHR44757 | DIGUANYLATE CYCLASE DGCP | - | - | 216 | 857 | 0.0 |
| SMART | SM00091 | pas_2 | IPR000014 | PAS domain | 312 | 377 | 3.2E-5 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 426 | 604 | 1.6E-58 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 432 | 586 | 2.0E-48 |
| Pfam | PF05228 | CHASE4 domain | IPR007892 | CHASE4 | 64 | 224 | 2.2E-17 |
| SMART | SM00052 | duf2_2 | IPR001633 | EAL domain | 601 | 843 | 3.2E-100 |
| Pfam | PF00989 | PAS fold | IPR013767 | PAS fold | 313 | 417 | 1.5E-6 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 436 | 591 | 3.84E-48 |
| NCBIfam | TIGR00229 | JCVI: PAS domain S-box protein | IPR000014 | PAS domain | 309 | 426 | 1.8E-12 |
| Gene3D | G3DSA:3.30.450.20 | PAS domain | - | - | 302 | 425 | 2.9E-16 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 432 | 589 | 1.86617E-60 |
| SUPERFAMILY | SSF55785 | PYP-like sensor domain (PAS domain) | IPR035965 | PAS domain superfamily | 303 | 418 | 1.5E-17 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 420 | 591 | 6.2E-67 |
| SUPERFAMILY | SSF141868 | EAL domain-like | IPR035919 | EAL domain superfamily | 606 | 850 | 1.44E-84 |
| Gene3D | G3DSA:3.20.20.450 | EAL domain | IPR035919 | EAL domain superfamily | 605 | 857 | 5.6E-90 |
| CDD | cd00130 | PAS | IPR000014 | PAS domain | 321 | 417 | 4.81901E-7 |
| Pfam | PF00563 | EAL domain | IPR001633 | EAL domain | 607 | 838 | 7.0E-66 |
| CDD | cd01948 | EAL | IPR001633 | EAL domain | 608 | 843 | 7.10308E-104 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.