Pseudomonas sp. 10B238, RT21_RS06970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGATCCGCACCGTGCAGACCGGCCCGACCCCGCGCAGCCTGCTCGATGACCTGAAACGGGCCTGCCTGGCCAATGACACTCAGGCTACCCGCCATGC ACTTGATGCCTGGGCGCGTCAGCAGCCCGAGACGCTGGCCGATATGGCGGCGCGCTTCGAGCCGCTGTCCGACGCACTCGACGGGCTAAACGGTGCGCTG TACAGCGAGACCGGTCAACGCTGGCAAGGCGAAGCCTTGTGGCAGGCCATTCAGAGCCTGCCGGCAAGACAGGCTGGCGATGCAGAACGGGAAGCCAGCG CACTGCCGCCGTTGTACCCGCGCTGAATTGGGGGTCCCAGTTCCGGGGTTACGACCAGTCCATTCGCCGCTGCCGCTGGTTCGTGCGCCAAGTAGCGAGT AGATAGACGCGTCGTGTCCTGCGCTTGGCATGTGGCTTGCTAAACCTGAGTCAGGTATCCCGGCTCGCACCGAACCCCTTCCGGACGGTGTGCGCTTCGC
|
|
| DNA Sequence for Gene |
>RT21_RS06970
ATGGCAAAGGTTCCCCTCAGCATGACCGACCCCACCCCTTCGCTCCGTCCTGACGCCAAAGCCTGGGTCGCCGGCAGCGACGCGCCAGAAAAGCATGTCG TGAACCTTGGTTTCATGGCGTTGACCGATGCTGCATCACTGATCGTCGCCGCCACCCAGGGCTTTGCCCAGCCCTACGGCCTCACGCTCAACCTGCAACG GCAGAGTTCCTGGTCCAGCGTGCGAGACAAACTCGTCGAAGGCGAACTGGATGCCGCTCATGGGCTTTACGGGCTGATATACGCCGTGCATCTGGGCATC GGAGGCGGTGCACCGAAGGACATGGCGGTGTTGATGGGGCTGGCGCAAAACGGTCAGAGCATCAGCCTCTCCCGTGAGCTGAAGGCCGCCGGCGTGACCG ATCCCGATGCGCTCGGCAAATGCGTGCGCCAGAGTGGTGCAAAACTCACCCTCGCGCAGACATTTCCAACCGGTACTCATGCGCTCTGGCTCTACTACTG GCTGGCCGCCTACGGCATTCACCCGCTGGCCGACGTGCGCACGCTGGTGGTGCCGCCATCCCTGATGGTGGCCCATTTACGGGCGCGTCGCATCGATGGC TTCTGCGCCGGCGAGCCCTGGGGCGCGCAGGCCATTGAAGAAGACATGGGCTTCACCATCGCGACCAGCCAATCGATCTGGCCGGACCATCCGGAAAAAG TGCTCGGCTGCACGCGCGAATTCGTCGATCAGTACCCCAATACCGCCCGTGCGCTGGTCATGGCCATCCTAGAGGCCAGCCGTTTCATAGACGAGAGCCA GGAAAACCGCCGCAGCACCGCGCAGCTGATCGCCGGTAGCGACTATGTCGATGCGCCCGTTGCGGCCATCGAGCCCCGCTTTCTCGGTCAATATGAAGAC GGCCTCGGCCATGCCTGGCTGGACAAGCACCCGCTGCGCTTCTTTGGCAACGGCGAAGTGAACATGCCCTACCACTCCGACGGCCTCTGGTTCATGACTC AGCTACGCCGTTGGGGCCTGCTGCGTGAAGATCCGGATTATCTCGCCGTGGCGCAAAGCGTGCAGCAGACCAGCCTCTACCGTGACGCGGCAACTGCCTT GAACATCCCTGTGCCCGACTCACCCATGCGCAACGCCATTCTCATGGACGGCAGTCGCTGGGATGGCAGCGATCCTGCGGGTTACGCACGCAGCTTCGCG TTGCATGCACTGGCTGATACCGCACTGCGCCCCAAGCCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAAGGGAGACTGTCATGCTTCGCGTTCTCCTGATCGACGATACCCCACGCAAGGTCGGCCGCTTGCGCAGCGCTCTGATCGAAGCCGGATTCGAGGTGAT AGAGGAATCCGGTCTGACCATCGACCTGCCCGAACGGGTCGAGGCGATTCGCCCGGATGTGGTGCTGATCGACACCGACTCCCCCGGCCGCGACGTAATG GAGCAAGTGGTGATGGTCAGCCGTGACCAGCCCCGTCCGATCGTCATGTTCACCGACGACAACAACCCCAACGCGATGCGCCAGGCCATCCGCGCCGGCG TCAGCGCCTATATCGTTGAAGGCATCCAGGCCCAGCGCCTGAAACCGATCCTCGACGTGGCCATGGCCCGCTTCGAAAGTGACCAGGCGATCCGTGCGCA ACTGCACGCGCGCGACCAGCAACTGGTCGAGCGCAAGCGCATCGAACTCGCCAAGGGCATGCTGATGAAGATGCGCAGCTGCAACGAGGAAGAGGCCTAC
|
|
| Amino Acid Sequence |
>nitrate transporter
MAKVPLSMTDPTPSLRPDAKAWVAGSDAPEKHVVNLGFMALTDAASLIVAATQGFAQPYGLTLNLQRQSSWSSVRDKLVEGELDAAHGLYGLIYAVHLGI GGGAPKDMAVLMGLAQNGQSISLSRELKAAGVTDPDALGKCVRQSGAKLTLAQTFPTGTHALWLYYWLAAYGIHPLADVRTLVVPPSLMVAHLRARRIDG FCAGEPWGAQAIEEDMGFTIATSQSIWPDHPEKVLGCTREFVDQYPNTARALVMAILEASRFIDESQENRRSTAQLIAGSDYVDAPVAAIEPRFLGQYED GLGHAWLDKHPLRFFGNGEVNMPYHSDGLWFMTQLRRWGLLREDPDYLAVAQSVQQTSLYRDAATALNIPVPDSPMRNAILMDGSRWDGSDPAGYARSFA LHALADTALRPKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|