Pseudomonas sp. 10B238, RT21_RS04960
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGACAAGCCAAGGTCTTCGTCGTCCTGCATGGCTTCCTGATTGGCCATTGCTCCAGTCGCAAGCAGGCTGGTGAAAAGGGCAGTGGCAATACTCAAGGT CTTCATCGGTAATCCTCCGGGTAGCTTGGAAGTGTTTGCTGCTCTACCTCTTAAATTCCGACTCGGTGGCCCGGGAATTGTTCGTGGGAAGCCGCATTGG CCCAGGCTTGCAAGCGTTAGCGCGGCCTCTAGCGCCGCGCTTTCGTTCGTTTTACCTCTGGTCGGTTTGCCGCCGACTGGTTCGTTCAGTTGAGTAAATG CGGCGAATTTCAGCTAGGCGCCGGTTCCAAGAGGTTCCGGAAAAGTGACTGCCTCGAGTCGTCGGCTCGCTTATCCACTCATCCTCGCAATATCCTCGGG GCGACCCGGATCGGCCATAATGTCGCGCGGCCCGCTTCGCTCTTGATGGAGTTGTTCAAGGGAAGCGGCGGTTTAGTCCAGTCACGAGTTTCTTACCGTT
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| DNA Sequence for Gene |
>RT21_RS04960
ATCCCGTCCAGAAAAATCATCCATGTCGATTGCGATTGCTTCTATGCCGCGATCGAGATGCGCGACGATCCCAGTCTTGCCAACCGGCCCATTGCGGTTG GTGGCTTGGCTGATCGACGCGGCGTTATTGCCACCTGCAACTACGAAGCTCGCGCATACGGCGTGCGCTCCGCGATGGCCTCCGGTCATGCGCTGAAGCT CTGCCCGGATCTGCTGATCGTGCGGCCGCGGATGGATGCCTATAAGGAAGCTTCACGCGAAATCCACGGGATTTTCCGGACCTACACCGATCTGATCGAA CCCTTATCGCTCGACGAGGCTTTTCTCGATGTGAGTGGCTGCGAGCATTTTGCCGGCAGTGCCACCCGCATTGCGCAGGACATCCGTCGGCGAGTCTGGC AGCAGCTGCGCATCACCGTTTCAGCAGGCGTTGCGCCTAACAAGTTTCTGGCAAAGATCGCCAGCGACTGGAACAAGCCGGATGGTCTGTTCGTGATCAC CCCGGATCAGGTGGATGATTTCGTACTCGCTCTGCCGGTCACCAAACTCCATGGTGTCGGCCGGGTGACGGCGGAGAAGCTGAAGCGCATGGGTATTCAC ACCTGCGCTGATCTGCGCAGCTGGAGGCGCCTTGATCTGGTTCGGGACTTCGGCTCGTTCGGTGAGCGACTGTGGGGGCTGGCGCATGGCGTCGACGAGC GCCTGGTTCAGGTCGAGAGCCGGCGCCAGTCGGTCAGTGTCGAGAACACCTACGAGCGCGACTTACCAGACCTTGCCGCCTGCCTTGAGCGACTTCCGGA GTTGCTCGAGCAGCTCGCCGGCAGGATGGCGCGACTCGATAACGGCTACCGGCCCGGCAAGCCGTTCGTGAAGTTGAAGTTCCATGACTTCACCCAGACG ACCCTCGAACAGTCCGGCGCTGGGCTTGAGCTTGAAGACTATTCCGACCTCCTGGCGGGCGCCTTTGCCCGTGGCAAGCGACCGGTGCGGTTGATTGGCG TCGGGGTTCGTTTGATCGACCTGCGAAGCGGCTTCGAGCAGTTGCGGTTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCCGTCCGTTGGTCATCCGTCAATGTCCATCCTGCTTTTTGGTACGTCTGTTGCTTCAGCTGTTGCGGCGTGGCCAAAGCTGCCACTTTTCCGGCGCG GATTGTTCAGACGCGCTCTAGCGACGAGTGGCCTAACTGAAGGGCAGCAGTGGCCGATACGGTGGAAGGTTTTTGACGCCTCGTCGCGAAGACCAGAGGT GTCGGTGATTGGACTAGATAACGCTTTTTGTTAGGCTTCCTATATAGATGGCAATCTGATATCAGATTAGGTGCGTGTGTTCCGTCTCGTGTTTTAGAGT TGTGCAAGTCGCGAAGCGGCAGGAGTGCCTTCCCTGATGGGGCTATTTTTCAAACGTCGTAAAGCCACCGCAATGGGGCTGCTGGGTCTTGAGTTCGGGC CGCAAGGCGTCGCACTCGCGCAAGTCCAGCGTGCTGACGGCGAGACGCCACAGTTGCTGCGTTGCGACTACCTTGAGGGTCAGCCGGAGGCGCAAGCTGA
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| Amino Acid Sequence |
>DNA polymerase IV
MPSRKIIHVDCDCFYAAIEMRDDPSLANRPIAVGGLADRRGVIATCNYEARAYGVRSAMASGHALKLCPDLLIVRPRMDAYKEASREIHGIFRTYTDLIE PLSLDEAFLDVSGCEHFAGSATRIAQDIRRRVWQQLRITVSAGVAPNKFLAKIASDWNKPDGLFVITPDQVDDFVLALPVTKLHGVGRVTAEKLKRMGIH TCADLRSWRRLDLVRDFGSFGERLWGLAHGVDERLVQVESRRQSVSVENTYERDLPDLAACLERLPELLEQLAGRMARLDNGYRPGKPFVKLKFHDFTQT TLEQSGAGLELEDYSDLLAGAFARGKRPVRLIGVGVRLIDLRSGFEQLRLF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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