Pseudomonas sp. 10B238, RT21_RS04125
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCTGCTGCTAGTCGTCGCAGCAATCGTCGGTTTCTGGTTATTTGGCGAATATGTGGTCGCCAGAGGCACTTCCTACCGTCCCGAAATTTTTGCGGCCA GCGTTGGGATGATCCTTGACAAGCCTTGGCTGGGCTTGGGGCTTGGAAGTGAGTATCAGGTCAAGGCCCTCGGCCGCATGTTCGATCACACCCATAACCT GTTCACCCATGTTGCGTTGGAACTAGGCCTCCCCGGCCTCGTCCTCTGGCTGGCCATTTGGGGCCGCAGCCTTGCCATTGCAGTGCGCGAGCGCGATACG ACGCTAGGGAACATGCTGATCGGGCTATGGGTGTTCTGCACGATGGCACTGTTGTTCGATGGCGCGAATCTTTGGGATTCGCCTCGGCCCGAGTGGTTCT TGACTTGGCTCCCTGTGGGATTAGCGATGGGGCTAATGGGCGTGAGAGCGCCCTCGAAGTGTTACCATCCACGACTTTTAACGTGCGAGCGCAGTCTTCC
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| DNA Sequence for Gene |
>RT21_RS04125
ATGAGTAGTGGCTCATCTCTGAACGCTGACACGGCATCTAGTTTTAGCATCTACTTGCGCTTGCTGCGCTACGTGCTCCCCTACTGGAAATTATTCGCTG TCAGCCTGCTGGGCTTTTTAATTTTTGCCTCCACCCAGCCGATGCTCGGCTATATCCTCAAGTTTTTTGTCGATGGGCTGAATAATCCGGATGCGAGCTT TTTTGCCCAGGTGCCACACCTGAGCGAACTGGAGTGGCTGGCCGAGCTCAAGCTATTGCAGGCCGTACCGCTGCTGATCGTGCTGATTGCGGTGATGCAG GGCATCGGATCTTTTCTTGGTAATTACTTTCTCGCCAGAGTATCGCTGGGGCTGGTGCACGACCTTCGCGTTGCGTTGTTCAACAACTTGCTGGTTCTGC CCAACCGATATTTCGACAGCCATAACTCGGGGCATCTGATCTCACGCATCACATACAACGTGACTATGGTTACCGGCGCAGCAACGGACGCGATAAAGGT AGTGGTGCGAGAGGGTATGACCGTGATCTTTCTGTTCGCCACACTGTTGTGGATGAACTGGAAGCTGACGCTGGTCATGGTGGTGATTCTGCCTGTCATC GGCGTGATGGTATCCAGTGCCAGCAAGAAATTCCGCAAACAGAGCAAGAAGATCCAGGTTGCGATGGGCGACGTCACGCATGTGGCGTCCGAGACAATTC AGGGTTACCGCGTGGTACGCAGCTTCGGCGGTGAGCCTTATGAGCAGCAACGCTTTTTCGATGCCAGTACCGATAACACTGGGAAGCAGCTGCGGATGGT CAAGACCAACGCCGTATACACACCCACATTGCAACTAGTGATCTATAGCGCGATGGCGGTGCTGATGTTCCTGGTGCTGTACATGCGCGGCGACGCTTCT GCCGGTGATCTGGTCGCCTATATCACCTTGGCTGGCTTGCTGCCAAAGCCGATTCGGCAGCTGTCCGAGGTGAGTTCCACCGTCCAAAAAGGTGTTTCTG GCGCTGAGAGCATTTTCGAGCAGCTGGACGAAGCTCCTGAAATCGACACCGGCTCCGTCGAACGTGAGCGTGTAGCAGGGCGACTGGAGGTCAGCGGCCT CAACTTCGTCTATCCCGGTACCGACAAACAGGTCCTGCATGAGATCAGTTTCACGGTCGAGCCCGGGCAAATGGTTGCACTGGTAGGGCGCTCGGGAAGT GGTAAGTCGACGCTGGCAAACCTGGTGCCCCGTTTCTACCACCATGACGAGGGGCGGATCCTGCTTGATGGTGTCGAGATAAAGGACTACGCCTTACGCA ACCTGCGCCGTCATATTGCCCTAGTGACACAGCAGGTCACGCTGTTCAACGATACGGTCGCTAACAACATTGCTTATGGCGACCTGGCCGGGGCGCCCAT GGAGGATATCCAGCGCGCAGCCCGAGACGCTTACGCCGATGAGTTCATACAGCAGATGCCTCAGGGCTACCAAACGCCAGTTGGCGAGAATGGCGTGCTG CTCTCCGGCGGTCAGCGGCAGCGTCTGGCCATAGCCCGGGCACTATTGAAGAATGCGCCGGTATTGATCCTCGACGAGGCGACTTCCGCTCTGGATACCG AATCCGAGCGGCATATCCAGGGAGCGCTGGATCACGCTATTACTGGCCGCACAACGCTGGTAATCGCCCATCGTCTAAGTACTATCGAGAAAGCGGATCT GATCCTGGTAATGGACCAAGGGCGCATCGTTGAGCGCGGCAAACACGCTGAACTGCTCAACGAGAATGGTGCCTATGCCAGGCTGCATGCGACCCAGTTC AAGGATGCGAGCGACGAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCGACCTGAATTTTTAGGCGATACGCAAACGCAGCGTCCGCTGACTGGACCAGTCGCAGCGGAACTGTGCGCTTGGGTATGGTAATGCGCGTCGTTGGC GGGCGAGTCGTCGCTCCTAAGGAGTCGTATTCAGTCGCGGCCGCCCATGGAGCAGTCGAACAAGCAAATCGAGCTATGCCGCTCCCGTGCAAAGCGGCAG AACACGGCGGCGCATGCTGTTATGCTTTGCAGCGTTTTTTCTTCCGCCCCGGAGCCCCCATGAAGCTGTCCATGCCCCGATTCGACCAAGCCGCCGTTTT GGTGGTCGGTGACGTCATGCTCGATCGTTACTGGCATGGCGGCACGTCGCGAATCTCCCCGGAGGCGCCGGTTCCGGTGGTCAAGGTCGAGCATGTCGAG GATCGGCCGGGTGGAGCGGCGAACGTTGCGCTGAATATTGCAGCGCTTGGTGCGCCGGCGGCGCTGGTCGGGGTTACCGGGGTCGACGAGGCGCAGCAGA
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| Amino Acid Sequence |
>lipid transporter ATP-binding/permease
MSSGSSLNADTASSFSIYLRLLRYVLPYWKLFAVSLLGFLIFASTQPMLGYILKFFVDGLNNPDASFFAQVPHLSELEWLAELKLLQAVPLLIVLIAVMQ GIGSFLGNYFLARVSLGLVHDLRVALFNNLLVLPNRYFDSHNSGHLISRITYNVTMVTGAATDAIKVVVREGMTVIFLFATLLWMNWKLTLVMVVILPVI GVMVSSASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEPYEQQRFFDASTDNTGKQLRMVKTNAVYTPTLQLVIYSAMAVLMFLVLYMRGDAS AGDLVAYITLAGLLPKPIRQLSEVSSTVQKGVSGAESIFEQLDEAPEIDTGSVERERVAGRLEVSGLNFVYPGTDKQVLHEISFTVEPGQMVALVGRSGS GKSTLANLVPRFYHHDEGRILLDGVEIKDYALRNLRRHIALVTQQVTLFNDTVANNIAYGDLAGAPMEDIQRAARDAYADEFIQQMPQGYQTPVGENGVL LSGGQRQRLAIARALLKNAPVLILDEATSALDTESERHIQGALDHAITGRTTLVIAHRLSTIEKADLILVMDQGRIVERGKHAELLNENGAYARLHATQF KDASDE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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