Pseudomonas sp. 10B238, RT21_RS04100
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTAACAGAGCTGGTCGATGGGTTTGATCCCGACGTCGTGCTTTTTGTACGTCCTGACCTGCTCTATCACGATGCCCTGCCCGGGTTCGCACTCAGCGCC TGTGCATCGAACCGCCGCGCGGTCTACATCCCTCATTGGCAATGGTGGAACGGTCTGAACGATCGTTTTGCTGTTTGCGGTCGTGACGTCTATGGCGCTT ATGGTCGTCGTGCAGAGCTTATGATTCCTTTTTGCCTGAAGACGCAGCGTGGGCTGCACGCCGAGCGGTTGTTGCGTTTTTCCATGGGTCAGACTGGATC TTCGGTGCGCACACTTGACATGCGGGCATCCCGGGTTCGATTGAATGGGGAGTTGGTAGACGAAACATTCTCCTCCAAGCATTCCATGGGTCGCCGGGAG AATCGTTTCATTCTGCCAGTGGCACGAATGCGCTCGCAGTTTGACAAATTTCGGTATCGGCAGGACGGTACGCTCGGCTGATTAGATGGAAGAACACCTA
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| DNA Sequence for Gene |
>RT21_RS04100
ATGCTCAAAGTTCTGCTTCTTGTGCAAAAAGAACAACGCGTCATGCTTGACCGGTTGTATGAAGGTATTGCGCAGAATTGCGAATGTGATACACGCTGGT TGAGTCGTAATGAACAAGCCAATTTGAAACGCTACTTCTCCGATTATGTAAGCCCGCAAAAGTATGACCGTATTATATTCTTTGTACGGTTCAAGCAGGA AATTCGGCAGGTTGGTTTCATTCGCAGTGTGCCAAATCTGGTAATACTGGAGCACGACGCTTATCAGAACTACATCAGCTGCAAGTACGCTGGGAAGTTC AGTGCACACTACCGGCGCTTACCGTGGGTGCGTGTGATCAGCTCCGGTTTCATGGTCAGCGAGCAGCTTCGTCAGGAAGGTTTTGATGCAGTCTTCGTCC CCAAAGGTTACGACCAGACGTTGTTGCGAGACCTGAGGAAGGAGCGGGATATTGAGCTGGCCTTCGTCGGGAGCACTAAAAGTGGCGCCTATAGCGAGCG CAAGGCGTTGCTTGATGAGTTCGCTAAGGTTGAGGATCTGGTGGTGACACGCACCAATTCCGGTAAAGACTACTGCGATACCCTCAACCGCATTCGCTTC TTCGTCAGTGCCGATGTCGGGATGGGCGAGTACATGATCAAGAACTTCGAGGCGATGGCCTGCGGCTGCGTATTATTCGCTTGGGACCAGGGCGAAGCGG AAAATCAGGCGTTGGGTTTTGTCGATATGGAAAACCTGGTGCTCTACAGAAGTCTCGATGAGCTGCGAAGTAAGCTTGCGATACTGCGTTCCGATCCCGC GCTGGCTGTCCGCATTGCTGCTGCGGGTCGGGCATTGGCGGAGGGGCGATACAGCTTCTTGCAGATCGGGCGGCGTATTGTCGAGGCATTGGACGAACCG CTTCGAGAGCGTCCACCGATGGGGCTGTTGAGTCGGCTGCGCCTGCGATGGGGGGCAAAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACACGTATTCGTTTGCTCGTTCCTTACTTCGGTCGTTGGCCGTTTTGGATGTCTTTCTTTCTGCAAACTTGTCGATGGAATACAGACATTGAGTGGCT TTTTTTTACGGACTGCGGCGTGCCAAGTGGTTTGCCAGACAACGTGAAGATTAAACCAATGTCTTTCCGGGAGTACTGCCAGTTGGTGAGCGAGGGGCTC GGCATCTCGTTTAAGCCAACCAACCCTTACAAGCTCTGTGACATCAAGCCAGCGCTTGGGTACCTACATGCCGAGCACCTGGAGGGTTTCGATTTCTGGG GCTTCAGCGATATCGATCTCGTCTATGGCGATTTGAAAAAGTATTTTTCCGAGGAGCGACTCGCCAAGTACGATCTGATTTCTACCCACGCGCGCCGTAT TTCCGGGCACTTATGCATGTTGCGAAACAGTAAGCGCATGCGCGAAGCCTTTATGCACGTTCCCGGTTGGCAGAACTGTTTCGAAGACCCTGCGCACTGC
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| Amino Acid Sequence |
>glycosyltransferase
MLKVLLLVQKEQRVMLDRLYEGIAQNCECDTRWLSRNEQANLKRYFSDYVSPQKYDRIIFFVRFKQEIRQVGFIRSVPNLVILEHDAYQNYISCKYAGKF SAHYRRLPWVRVISSGFMVSEQLRQEGFDAVFVPKGYDQTLLRDLRKERDIELAFVGSTKSGAYSERKALLDEFAKVEDLVVTRTNSGKDYCDTLNRIRF FVSADVGMGEYMIKNFEAMACGCVLFAWDQGEAENQALGFVDMENLVLYRSLDELRSKLAILRSDPALAVRIAAAGRALAEGRYSFLQIGRRIVEALDEP LRERPPMGLLSRLRLRWGAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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