Pseudomonas sp. 10B238, RT21_RS04065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCACCCAGCATTCGTTCATCATCACCGAAGAACTGGCGCCGACGGTCAGCCTCGAGGACTTCGCCGCAAACTGGCGTGAACAACCGCCGGAGCCTGCGC TCAAGCGCGCGCTGATTGCGGAAGTCGCTCGCATGGCTGGGAACATGCACCGTGCGGGAGTCAATCACCGCGACTTCTACATCTGCCATTTTCTGCTGCA TACCGACAAGCCGGTGACGGCGCATGATTTTCGCCTGTCGCTCATCGACCTTCACCGCGCCCAAACCCGCACCCAGACGCCACGCCGCTGGCGCAACAAG GATCTGGCCGGGTTGTATTTCTCGGCGTTGGGCATCGGCCTGACGCGCCGTGACAAGCTGCGTTTTCTCCAGGTCTATTTCCAACGGCCATTACGGGATG TCCTGCGTGACGAGGCTTCGTTGTTGACTTGGCTGCAACGAAAGTCCGAAAGGCTGCAGAGCCGCTTCCTGCGTAAGTATGCGTCGGGTGCCCACCAGTG
|
|
| DNA Sequence for Gene |
>RT21_RS04065
ATGCGTTGGTGGACCGTTGACGGAATCAACTCCGACGCAGCGAATGCGTTCGCCAGTCTCGACGCTGTGTTCGCGCTGAATGGCGAGCCAATCACGCGTG ACCCGCTATCCGAGGTGGTTCGTGTCAGCATTGGTGGGCAGCGTTACTATGTGAAGCGCTACTGGGCGGCGGGTAAAGGCGTGCGGCGTTTCATCGGGCG TCCACGCGTCGAAGCTGAGTGGCAGAATTTGCAGCACTTTCATGAATGGGGAGTCGCGGTCGCTCCACTGGTTGCCTGGGGGCAGCAGCGCCGTGCAGGA TTCTTTCAGCGGGGTGCCTTGGTCACCCTGGAAGTACCCGGCACTCTAGATATGGCTGCCATGGCTAAGGATGGAGATGCACGCCTGGCGGACCCGCTGT GGGTTCGCCAGCTCAGTGAGCAATTGGCAAGCGCGACGCGCACTCTTCACGCTCACCGGTTCGCTCATAACGACTTGAAATGGCGCAACCTGCTGGTCGA CGAAGCGGGCAAGCTGTACCTAATTGACTGCCCCTCAGGTGACTTCTGGTGGGGGCCGGTTCTGAGGCATCGCATCATTAAGGACCTAGCTTGCCTGGAT AAGGTAGCCAGGTGCACCTTGTCCCGCACTCAGCGGCTGCGTTTCTTTCTGCTCTATCGACAGCAGGCGCGGCTCGGCGCTGAAGACAAGGCGCTTATCA GGAAAATACTGACCTATTTCGAGGGACGCGAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGGATTTCCTTTCGCCAGCGCATGCCGGTTCATTGCGTAGCGCAAGCCTGGATAGCTTCGACACGTTATGGAGGTTGGAGCTTGATGCCGTCGATGTGCC TAGCGCCGTCGACGGCGGTTGGAGCAGCGTATACCGGCTCGATATCGGTGGTGTCGGTTATTACCTTAAACGGCAAAGTAACTACCTGTCGCGTAGCTGG CGTCACTCGTTCGGTGAGCCGACCTTTGCTGCTGAGCTTCGTAACATTCGCCGCTATCAGCACAAGCATATTCCCACACTGGAAGCTGCATTCTTTGCGC AGCGCCGTACCCGATGTGCGGTCAACGCCGTTCTGCTGACTCGGGCACTGGACGGTTGGCAGGACCTGAGCAGTCTGCTTTGCCAGTGGTCAGATCTAGG AATGGCAAGCCGCCAGGCGGTACTCACTTGCTGCGGACGGCTGGCCCGTCAGCTACATAGTGCTGGCGAAGTCCATGGGTGTTTTTATCCCAAACATATT
|
|
| Amino Acid Sequence |
>heptose kinase
MRWWTVDGINSDAANAFASLDAVFALNGEPITRDPLSEVVRVSIGGQRYYVKRYWAAGKGVRRFIGRPRVEAEWQNLQHFHEWGVAVAPLVAWGQQRRAG FFQRGALVTLEVPGTLDMAAMAKDGDARLADPLWVRQLSEQLASATRTLHAHRFAHNDLKWRNLLVDEAGKLYLIDCPSGDFWWGPVLRHRIIKDLACLD KVARCTLSRTQRLRFFLLYRQQARLGAEDKALIRKILTYFEGRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|