Pseudomonas sp. 10B238, RT21_RS01165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. 10B238 scaffold1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGTGCTGGGTGTCCTGTACGAGAGTTACATCCACCCGCTGACGATCCTGTCCACACTGCCTTCAGCCGGTGTCGGCGCGTTGCTGGCCATTATTCTGA CGGGCGAAGAGTTCAGCCTGATCTCGCTGCTCGGGCTGTTTCTGCTCATCGGAGTGGTGAAAAAGAACGCGATTTTGATGATCGACTTGGCGCTGCAATT CGAGCGTAACGATCATCTGGCGCCGGACGAGTCGATTCGCCGGGCTTGCCTGTTGCGTTTTCGGCCGATCCTGATGACCACTATGGCGGCGATCCTTGGC GCATTGCCGTTGCTGCTCGGGGGGGCGGAGGGGGCAGAAATGCGCCAGCCGTTGGGCCTGACCATCATTGGTGGCCTGATCCTCAGCCAGATCCTAACGC TCTACACCACGCCGGTGGTCTACCTCTATCTGGACCGCGCGCGCCACCGTTTCAACCGCTGGCGCGGTGTACGCACCGATGCCGCCCTGGAAAGTCCGCT
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| DNA Sequence for Gene |
>RT21_RS01165
ATGAGTTCGTTGTCCCTGAAAAACGCCCTACGCCCGCTGGCCATCGTCGTCATGACTTTTTCTCTAGGTGCCTGCACCTTGGGTCCTGACTACCAGCGCC CCGAGCTGCCAATGGCCGCGGAATTCAAGCGGGCCGAAGGTTGGAAGGTCGCCAACCCGGCCGACGTGCTGGAGCGCGGCAGTTGGTGGCGGCTATACGG TGATGCGAAGTTGGATGCATTGGTCGAACGGCTGAACGTGTCCAACCAGAACCTGGCGGCGGCCGAAGCGCAGTACCGCCAGGCGCGCGCGCTGGTGCGG GGGGCTCGCTCTCAGTTGTTCCCGACAGTGGGGGGCAGCGCCGGCGCGACGCGTGCCGGGCAGGGCAGTTCGACCAGCTCAGCCGCACAGAGCGCAAGCG GCTTCAGCGGCATCAGCGAGAGTTACAGCGTGGGGCTCGACGCGGCCTGGGAGCTGGACATCTGGGGCCGTCTGCGGCGCAACCTTGAAGCCAATCGAGC CAATATGCAGGCCACAGCAGCCGATCTCGCTGCTGTGCGGCTGAGCCTGCAATCCGAACTGGTCCAGACCTATTTGCAGTTGCGCGTGATGGACGAACAG CAGCGGCTACTGAACCAGACGGTCGAAGCCTTTGCGCGATCATTGCGCCTCACTGAAAACCAGTATCGTGCGGGCATCGTGCCGAAGTCGGATGTGACCC AGGCGCTGACTCAGCTCAGAAGCACGGAGGCTCAGGCCATCGACCTGCAATGGCAACGGGCCCAGATGGAGCACGCTATTGCGGTGCTGATTGGGGTACC CCCTTCGGAGCTGGACATCGAGGAACGTGATGAAATCCCCGATTTGCCAGCAGTGCCGCTGGCCCTGCCTTCGCAATTGCTCGAACGCCGCCCGGATATC GCGTCGGCTGAACGGCAAGTGATTGCGGCAAACGCGCAAATTGGCGTGGCCGAAGCCGCCTGGTATCCGGACCTGACACTGAGCGCGAGCGGTGGCTATC GAAACAGCAGCTTTAGCGATCTGATCAGTCTACCCAACCGCTTCTGGTCATTAGGCCCGCAGCTGGCCGCCACACTGCTTGATTTCGGTGGCCGGCGTGC CGACCTCGAAGCGGCAGAGACCAACTATGACCTGACAGTGGCCAATTACCGTCAGACCGTGCTCGACAGCTTCCGTGAGGTTGAGGACAACCTGGTGCAA TTGCGCGTCCTCGCCGCTGAAGCGGTGGTTCAACGGCAAGCGCTGGAAGCCGCCCAGGAATCGTTACGTCTGATCCAGAACCAGTACCGCGCCGGTACAG TCGACTTCCTCAGCGTCGCCACCGTGCAAACCAGCGCCCTGAACAACGAACGCACCTACCTGACCCTGCTGGGCGATCAACTCGCTGCCAGCGTTCAACT GATCGCAGCGTTGGGCGGCGGTTGGGAGGAAGCGCAGCTGGATTTCGAACCGCTGCTAGAGACGCCTGAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAACCCAACGGCGCCAACGTGCGGGCCCAAATAACATTCGTGGCTGCTGGAGTGTGCGCTGCGTATGGGGGGCGGTAATCTCGCCGAGCGGCGTTGGGGA AACCGCGGCGTTGCTGCCGCGGTTGGAAGGTGAGGCGGGGAGGTCAGTCGCGCTGCTTGCGGTTAACCGTTTGTGCTGCCTTGATGATATCGGCGCCGAT CACCGGTTCGAATTCCTGCCACACCGGTCGCATGGCTTCACGCCACGCTTCGCGTTGTTCCGGTGTCAGCTCGATGATCTCGGACGTGCCCGCCTTGCGG ATACGCTCGCGGTCGGCCTGGTTGGCTTCTTCCGCGGCGCGGTTAACCTCGAAGGTGACCTCGTCGATAATGCCTTCTAACTCGGTGCGCACCTGGTGCG GTATGCCGAACCAGAACCGCGTATTGCTCACCAGCATGTAGTCGAGCACGCCATGGTTGGATTCGGTGATGTAAGGCTGCACCGTGTGCATCTTCTTGCT
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| Amino Acid Sequence |
>RND transporter
MSSLSLKNALRPLAIVVMTFSLGACTLGPDYQRPELPMAAEFKRAEGWKVANPADVLERGSWWRLYGDAKLDALVERLNVSNQNLAAAEAQYRQARALVR GARSQLFPTVGGSAGATRAGQGSSTSSAAQSASGFSGISESYSVGLDAAWELDIWGRLRRNLEANRANMQATAADLAAVRLSLQSELVQTYLQLRVMDEQ QRLLNQTVEAFARSLRLTENQYRAGIVPKSDVTQALTQLRSTEAQAIDLQWQRAQMEHAIAVLIGVPPSELDIEERDEIPDLPAVPLALPSQLLERRPDI ASAERQVIAANAQIGVAEAAWYPDLTLSASGGYRNSSFSDLISLPNRFWSLGPQLAATLLDFGGRRADLEAAETNYDLTVANYRQTVLDSFREVEDNLVQ LRVLAAEAVVQRQALEAAQESLRLIQNQYRAGTVDFLSVATVQTSALNNERTYLTLLGDQLAASVQLIAALGGGWEEAQLDFEPLLETPER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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