Pseudomonas simiae MEB105, RU03_RS05285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGGTTGATTGGCTCTTCCCAAAACCGCTGCAAGGGCTTTACATTGGCACTTGTAGCGGTTTTGCGAGGGCCTGCGAGAAATCAGCGCTTCCCTAAACG CTGGTGATTTTTTAAACTGTTCAGTCCGCTCGCCCAACCGGGCAGCGCGCATCTTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAAGAC TGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACTGGCGGCAAAGAGCCCCTGGTCCAGTGGG AAAACGACAAGCCTACTGTTGTAGCCCTGCGTGAAATCGCTGAAGGCCTGATGAGCTACGAGTTCATCGCCAACGCTGAAATCGTTGAAGACGAACCGCT GTTTGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGGTCACAGCCAACGGCAGGAGTTCACACT
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| DNA Sequence for Gene |
>RU03_RS05285
TTGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGGCCTACCTCGGCCCAGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGACGGTCAGCGCCGCCGCAGTGGCGAGGCGTATGTCACCCATCCTCTTGCGGTGGCAAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCTGCGATGCTGCATGACGTGATCGAAGACACCGGTATTGCCAAGGAAGCGCTCAGCGCGCAATTTGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAAACCAAAGCCGAAGCCCAGGCGGAAAACTTCCAGAAGATGGCCATGGCCATGGCCCGCGATATCCGGGTGATCC TGGTCAAGTTGGCCGACCGGCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAAAAACGCCGGCGCATCGCCAAAGAAACCCTGGAAATCTACGC CCCCATCGCCAACCGGCTGGGCATGCACGCCATTCGTATCGAATTCGAAGACCTCGGTTTCAAGGCCATGCACCCGATGCGTTCGGCGCGCATCTACCAG GCGGTCAAGCGCGCGCGTGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCGCTGAGCCACTGCCTGGCGATCGACGAGATCGAGGGCGAGGTCA GCGGGCGGCAGAAGCATATCTACGGCATCTATAAAAAGATGCGCGGCAAGCGCCGGGCCTTCAACGAGATCATGGACGTGTATGCGTTCCGGATCATCGT CGACAAGGTGGACACCTGTTATCGCGTGCTGGGCGCTGTACATAATTTGTACAAACCTTTGCCGGGCCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCGCTGCACACCACGTTGTTCGGCATGCATGGGGTGCCGATCGAGATCCAGATCCGCACCCGCGAAATGGAAGAGATGGCCAACAACG GCATTGCTGCCCATTGGCTCTACAAATCCAGCGGCGACGAGCAGCCCAAAGGCACCCATGCCCGCGCCCGCCAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAACGGGCCGGCAACTCCCTGGAATTCATCGAAAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTATTCACACCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTTGCCTACGCCGTGCACACCGATGTGGGTAACAGCTGCATCGCCTGTCGGATCAATCGTCGTCTCGCGCCGC TGTCCGAACCGCTGCAGAGTGGCTCCACGGTCGAGATCGTCAGCGCTCCGGGCGCACGCCCGAACCCGGCCTGGCTGAACTTCGTGGTCACCGGCAAGGC CCGCACGCACATCCGTCACGCGCTCAAATTGCAACGCCGCTCCGAGTCCATCAGCCTGGGCGAACGCCTGCTGAACAAAGTCCTCAACGGTTTCGACAGC GCCTTGGACAAGATTCCTACAGAGCGCGTGCAAGCGATGCTCCACGAGTACCGCCAGGAAACCATCGAAGACCTGCTGGAAGATATTGGCCTGGGCAACC GCATGGCCTATGTAGTCGCCCGCCGCCTGCTCGGCGAAGGCGAACAGCTGCCGAGCCCCGAAGGTCCGCTGGCGATTCGTGGTACCGAGGGCCTGGTGCT CAGCTACGCCAAATGCTGCACACCGATCCCCGGCGACCCGATTGTCGGCCACTTGTCGGCCGGTAAAGGCATGGTGGTGCACCTGGACAACTGCCGCAAC ATCACCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCATGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTGCGGGTGGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTCGCCAGCAGCGTCAACGCGGCCGACGGCAACATCGAGAAGATCAGCATGGACGAGCGCGATGGCCGCATCAGCGT GGTCCAGCTGGTGGTCAGCGTGCACGACCGCGTGCACCTGGCCCGTGTGATCAAGAAACTGCGCGCCTTGACCGGGGTCATCCGCATCACCCGTATGCGT GCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGCTCTACTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGTGACAAGGCCCCAGCCGCGATCGGCACCTACTCCCAGGCGATCAAGGCGGGCA ACACCGTCTACATGTCCGGCCAGATCCCGCTGGACCCAAAGACCATGGAACTGGTGGAAGGCTTCGAAGCACAGACCGTACAGGTCTTCGAAAACCTCAA GTCGGTCGCCGAGGCTGCCGGCGGCTCGTTCAAAGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGAACAGCCGTACCCAGCCCGCGCCGCCATCGGCGTTGCCGCCCTGCCAAAGGGTGCGCAGGTTGAGATGGACGCGATTCTGGTCATCG AGTAAAACACCCGGCGCAGCCCCCATAGGCTGCGCCGATTTCGTTTCAGAAGGATTTCATGATGCGCAAAGCGCTTGTAGCCTCATCACTGCTCGCCCTG
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| Amino Acid Sequence |
>bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MPSIDALADRLSAYLGPDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALSAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAIDEIEGEVSGRQKHIYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS ALDKIPTERVQAMLHEYRQETIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ITEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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