Pseudomonas simiae MEB105, RU03_RS05120
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGTGAGGCCACGGCCCTCGCCACCCTTGAGCAGGGTGCCGACACGCTCTTTCATTTCCCGCGCCGCCTTGTTGGTAAAGGTCATGGCGACGATGTACT GGGCGCGGATGCCGCACTGCTGGATCAGGTGCGCGATCTTGCGGGTGATCACGCTGGTCTTGCCGGAGCCTGCACCGGCGAGCACCAATAGAGGGCCGCC GACGTAGTTCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATACAGAATTCAGGGAGTCGTTGTTCAAAAGGGCGGGCATTTTAACAGGCTCGCAGG ATTCTGCTCTGTCAGAACGACAGTGTGACGTACCACTCGATCTAAATTTGCCGGTTTTGATACTTTGCCGCAGGATGTCGGGGTTATTTGCGACTAATCT TTACAGTTCGCGTGTTTGGTAACCCCTATCATTGGTGATCATCTGGCCGCACGTCATAATGCCCGCTGTCACGAAATTTTGCAGAGTCTAGGGAGCTAGC
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| DNA Sequence for Gene |
>RU03_RS05120
TTGTCTACGCCTGTCGAACCCTTGCGTTTGCTGCTGCTGGCCGACGAGCCCGCGTGGGCAGCGTTGTTGCGCGAGTGCCTGGCGCCGATGGGCGATGGGG CTGTGCTGATCAGCGCACCAAACTGGGAGTCCGTGAGCCGTCTGTTCGATGACGACCACAGCGCCGTGCTGTTGACCACGCCCAGCTTGCAGCCCGGCCC TGGCCGCTGCAGCCTGCCGTGCGTATTGCTGCTGGAGCAGGAACCGCTGGTTTCGCCGCTGGGCGTCAGCGATTGGCTGGTGCGCGATGTATTGGATGCC GATACAGTGCGCCGCTGCCTGCGCCACGTCCGCGAGCGTGGCGTACTGGAAAACACCCTGCAGCGCCTGGCCGAACAGGACCCGCTCACCGGTATCGCCA ACCGCCAGGGCTTCCAGACCTTGCTCGCCGCACGACTGGTCGAGAATGAAGGCCGTGGCCTGGCCCTCGGCCACCTGGACCTCGACAATTTCCGCCACGC CAACGACGCCCTCGGCCACCAGGCCGGCGACCGGCTGATCCTGCAAGTGGTCTCGCGGCTCAAGAGCCAACTTGAGGTCGGGGACCAACTGGCGCGCCTG GGCAGTGACGAGTTTGCCCTCTTGATCGACACCCGCCGCGCGCCCCAGCGAGCCGAGTGGATGGCCGAGCGCATCACCGAAGTCATGGCCGAACCGTACT GGGTGGATGGCGAAAGCCTGCTGATCGGCTGCAGCCTGGGGGTGGCCCATGCCCGTGCCCGCGCCGGCGCCGACCCGCTGATGTGGCACGCCCATATCGC CATGCAGCAGGCCAAAAGCACCCAAGGCTGCACCTTTCATATCTTCAACGAACGCATCAACCGCAACGCGCGCAGCCTGGCCGACCTGGAAAGTGAGCTG CGCCGCGCCTTGCGTCGTGACGAACTGGAGCTGCACTACCAACCGCGCCTGGACCTCGACGACGGGCATATCGTCGGCCTTGAAGCCTTGGTGCGCTGGC GCCACGACGAGCGTGGCCTGTTGCCGCCGAGTGAGTTCGTGCCCCTGGCCGAACAAAGCGGCCTGATCGTGCCGTTGGGTTACTGGGTGATCTCCCGCGC GCTGCGCGACATGCAGGACCTGCGCGAACGCGGCCTGCCGCCGCTGCACATGGCGGTCAACCTGTCATTCCGTCAGTTCCAGGACAGCCAGTTGCTCTCC ACCCTCAGCCGGCTGATTGCCGAGCGGGGCGTTGAGGCACAGTGGCTGGAGTTCGAACTCACCGAAACCGCCGTGATGCGCCGCAGTGACCTGGTCAAGC AGACCATGGACGCCCTCGGCCGCCTCGGTGTTCGGTTCTCCCTGGACGATTTCGGCACGGGCTTTTCATCGTTCGTGCACCTCAACAGCCTGCCGATCGC CTTGTTGAAGATCGACAAGAGTTTTGTCGGCGGTATGGAAGAGCGCGAAGAGAACCGCAAACTGGTGCACGCCATGATCAACCTGGCCCACAATCTCAAC CTTGAAGTGGTCGCCGAAGGCGTGGAAACGCCGGAGCAACTTGCACTGTTGCGCTTGTTTGGCTGCGACCAGGCCCAGGGTTACCTGATCAGCAAGCCGC TGCCGTTGGCGGAGCTTGTGGAGTACCTGACCTTCGGGAAAAGCCAGCAGGCCTTGCTGGGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGGGTGCCCACCCAATCAACTGTGGGAGCAGGCAAGCCAGCTCCCACACTGACCGATTACAGCCTTCAATCCGGCTGAGCTGCTTGCAACGTGCTGTAG GTTTCAGGCTCTCGCCGAATCATGCGCTTCATCTTCGCTTCAAATGCCCAAGTCAGGCTGACTGCCGCGCACGCCAGGCCCAGCGCCAAGCCCCACCATA CGCCGGTCGGTCCCCAGCCCAGGGTGAAGGCCATCAGCCAGGCCGACGGTGCCCCGATCAACCAATAGCAACCCGCGCCGATCAGGAAGGTGGTCTTGGC GTCCTTGAGCCCGCGAATGCAGCCCATGGCGATGGTTTGCACACCGTCGAACAGCTCGAACCAGGCGGCGACAGCGAGCAGGCTGACGGCCAGGACGATC ACGTCATGGAAGGCCGGGTCGTTATGGTCGATAAGCAATCCGATCAAAGGATCGGAATAAAGCCACAGCACGGCGGCAAATCCCAACATCACCGCTGCGC
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLADEPAWAALLRECLAPMGDGAVLISAPNWESVSRLFDDDHSAVLLTTPSLQPGPGRCSLPCVLLLEQEPLVSPLGVSDWLVRDVLDA DTVRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLAARLVENEGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKSQLEVGDQLARL GSDEFALLIDTRRAPQRAEWMAERITEVMAEPYWVDGESLLIGCSLGVAHARARAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESEL RRALRRDELELHYQPRLDLDDGHIVGLEALVRWRHDERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQDLRERGLPPLHMAVNLSFRQFQDSQLLS TLSRLIAERGVEAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEEREENRKLVHAMINLAHNLN LEVVAEGVETPEQLALLRLFGCDQAQGYLISKPLPLAELVEYLTFGKSQQALLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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