Pseudomonas simiae MEB105, RU03_RS04705
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTCAACGGCTATAAAGATATCCCTATCAACCAGTGGTTGTCGTTTTACGGTATGGCAGGTGTCGGCGTCGCACGCATTGAAGCCGAAGGCTATCAAAC CAATGAAAGCCGCCGTTTCGCCAACAACCGCCAACACAACCTCGCCTATAGCGTAGGCATGGGTCTGGAAGCGAAGGTCAGCCAGCAACTGAGTCTGGGA GCGGGCTATCGTTACATCGCCATGGGTGATGTGGAAACCGGCTACAACACCTTCGCAAACCGTGTGAACGCCCGTGATGAACAACTCAAAGGCAAGCTCA AAGAGCAGAACGTGTTCCTGGAAGCGCGTTACACCTTCTGAATCCCATTAGAGAATGCCGCTTTTGAAGCGGCATTTTTTTACCCAACCGACGACGATTC ATTCACAGGCGACAGGCTATATTCAGTCAAGCCGTGCAACCATGCCGGTACTGCTACCTCGCCCACTCAACGCCACTCTGAAACGGATGCCTTCGTCGTC
|
|
| DNA Sequence for Gene |
>RU03_RS04705
ATGAGCCAACAGCCCTTCCTGCCGTTCTCCAAACCCACCATCGATGAAGCCACCATCTCGGCGGTCGGCGATGTACTGCGCTCAGGCTGGATCACCAGTG GGCCGAAAGTGCAGGCGTTCGAGGCTCAGTTGTCGGAATACTTTGGCGGCCGGCCGGTGCGCACCTTCAACTCCGGGACGTGCACCATGGAGATTGCCTT GCGCATTGCCGGGATTGGGCCGGGCGATGAAGTGATTACCACGCCGATCTCCTGGGTTGCCACGGCCAACGTGATCCTGGAAGTGGGCGCCACGCCGGTG TTTGCCGATATCGACCCGGTCACCCGCAACATCGACCTGGCCCAAGTGGAGGCCGCGATTACCCCGCGCACCAAGGCGATCATCCCGGTTTACCTGGCCG GCCTGCCCCTGGACATGCCGATGCTGTATGCGCTGGCAAACAAGTACAACCTGCGCATCGTCGAGGATGCTGCTCAGGCGCTGGGTTCCAGCTGGGATGG CGAGCGTATCGGCGCCACCGGTGATTTCGTGTCTTTCAGCTTCCAGGCCAACAAGAACATCACGTCTTCCGAGGGCGGTTGCCTGGTCTTGAACAACGCC GAGGAAGCGCGGCTGGCGGAAAAATATCGGCTGCAGGGCGTTACCCGCACCGGCTTCGATGGTTTGGATGTGGATGTGCTGGGCGGCAAATTCAATATGA CCGACATCGCCGCCGCCATTGGCCTGGGGCAGTTTGCCCATATCGAGCAGATCACCACGCATCGTCAGAACCTGGCGCGGCACTATTTCAAATGCTTTGG CAGTGATTTTGAAGAGCAATACGGCGCACAACTGCCACCGGCCGACTTCGAAAACAGCAACTGGCACCTGTTCCAACTGGTGTTGCCGGAACGCCAGGAC GACCTGCCGGCCCGCGCCACCTTCATGGAGCAGATGCAGGCCCACGGCGTCGGCATTGGCTATCACTACCCACCGATCCACCTGCTGAGCCTTTATCGCG CGCAGGGGTTCAAGGAAGGTATGTTCCCGGTGGCAGAAAAGGTAGGTCGTTTGATCGTGTCGTTGCCGATGTTTACAGCAATGACAGAAGCGGATGTGGA GCGGTCGGTGGCAGCAGTGAAGGCGGTCCTGAAAGCCGGCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCATAATCAGCTGTGGGAGCTGGCTAGCCTGCGAGTGCATCACCTGGGTATCACTGATACACCGAGGTGCCCGCATCGCAGGTTAGCCAGCTCCCACATT GTTTTGAGCCGGTCCAGCTATTGGCGTTTACTCGCCGATGGCGGCTTTGTAGCCAGCAGCATCCAGCAGTTTTTCCAGATCAGCCGGGTCGTTTGGCTTG AGCTTGAAGATCCACGCGCCGTACGGGTCGGAGTTCAACAGCTCTGGCTCGTCGCTCAAGGCCTCGTTCACCGCGATCACTTCGCCAGCTACCGGCGAGT AGATATCCGAAGCGGCCTTCACCGACTCCACCACACCCGCCTGGGCCGCCGCGTCAAACACGCTGCCGACTTCGGTCAGCTCAACGAACACCACATCACC CAACGCTTCCTGTGCATGGTCGGAAATACCGACGGTCACGGTGCCGTCGGCTTCCAGGCGTGCCCATTCGTGGCTTTCGGCGAAACGCAGGTCGGCAGGG
|
|
| Amino Acid Sequence |
>aminotransferase DegT
MSQQPFLPFSKPTIDEATISAVGDVLRSGWITSGPKVQAFEAQLSEYFGGRPVRTFNSGTCTMEIALRIAGIGPGDEVITTPISWVATANVILEVGATPV FADIDPVTRNIDLAQVEAAITPRTKAIIPVYLAGLPLDMPMLYALANKYNLRIVEDAAQALGSSWDGERIGATGDFVSFSFQANKNITSSEGGCLVLNNA EEARLAEKYRLQGVTRTGFDGLDVDVLGGKFNMTDIAAAIGLGQFAHIEQITTHRQNLARHYFKCFGSDFEEQYGAQLPPADFENSNWHLFQLVLPERQD DLPARATFMEQMQAHGVGIGYHYPPIHLLSLYRAQGFKEGMFPVAEKVGRLIVSLPMFTAMTEADVERSVAAVKAVLKAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|