Pseudomonas simiae MEB105, RU03_RS27405
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_42, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTTTCGCGGATCAACGAGCGCACATCGATGATCATCTGCCCCAGCTGCTTGCGACCCTCCCACCAGCGGTCATAGCAGGCGTTGTTGCGAAAGCTCATG AAAATCGACAGCGACAGCCCGAGCAAGGTGAATGGCGTGGCATTGACCTTGGAGAAATACGCCGGATGCAGGGTTTCCACCAGCACGATCACCGAGGCCA GCAAGGTGACTAACAGGCTGCGCAAGGCGATGCGCTTGGCTATTGACCCCTTGAGGGAAAACAGGATGCCCAGGAGGTTGGGTTTGGGTCGGACTATCAT TCAGGGGCGGGCTTCTGTGTCGGTGCAGCCCATCAGGTTAGAAGCACGCACTGCGCCCGTCCAATCGATTGAGCTGACGGGCTGATCGGCGGGGTCGATG ACTGGCCAAACCAGTCAGGCAGGTTGAGGGCTTTGACCATTGCCGCAGTGGCGCTCTGGGGCGACTATTTCGACGATTCGGACTGTTAAAGAGAATAACA
|
|
| DNA Sequence for Gene |
>RU03_RS27405
ATGCAGATTGAAAACAAGATCTTCCTGGTCAGTGGCGGTGCCTCGGGCCTCGGCGCGGCCACTGCTGAAATGTTGGTAGCGGCAGGTGCCAAGGTGATGC TGGTGGACCTCAACGCCGATGCCGTGGCGGCCAAGGCCCAGCAGCTGGGTGAGAATGCCCGCAGCGCCGTGGCGGACATCAGCCAGGAAACGGCCGCCGA AGCCGCCGTGCAGGCCACAGTTGCGGCGTTTGGCGGGTTGCATGGGCTGGTGAACTGCGCCGGTGTGGTGCGTGGCGAGAAAATCCTCGGCAAGGACGGC CCTCACGGGCTGGCCAGCTTCGCCCAGGTGATCAACGTCAACCTGATCGGCAGCTTCAACCTGTTACGCCTGGCGGCCGCCGCCATTGCCGAAACCGAGG CGAATGCCGACGGCGAGCGCGGTGTGATCATCAATACCGCCTCCGTCGCCGCGTTTGACGGGCAGATCGGCCAGGCGGCGTATGCTGCGTCCAAGGGCGC CATCGCCAGCCTCACATTGCCTGCCGCGCGAGAACTGGCGCGGTTTGGTATCCGCGTCATGACCATCGCCCCCGGTATCTTTGAAACGCCGATGATGGCC GGCATGACGGAGCAAGTGCGCGAGTCCCTGGCTGCGGGCGTGCCGTTTCCGCCACGCCTGGGCAAACCCGCCGAATACGCCGCGCTGGTGCGGCACATCA TCGAGAACAGCATGCTCAATGGCGAGGTGATCCGTCTCGACGGTGCTTTGCGCATGGCGGCCAAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAGGAGTTCCCATGACCGACCCCATCGTTATTGTCAGCGCCGTGCGCACGCCCATGGGCGGGTTCCAGGGTGATCTCAAGGGCCTGACAGCGCCGCAGC TGGGTTCCGCCGCCATTCGTGCGGCGGTCGAGCGTGCCGGTATCGCCACCGATGCCGTGGATGAAGTGCTGTTCGGCTGCGTACTGCCCGCTGGCCTCGG CCAGGCACCCGCACGCCAGGCGGCGTTGGGCGCGGGCCTGGACAAGGCCACGCGCTGCACCACCCTCAACAAGATGTGCGGCTCGGGCATGGAAGCCGCG ATCCTGGCGCATGATTCGCTGCTGGCCGGCAGCGTTGATGTGGTCATCGCCGGTGGCATGGAAAGCATGTCCAACGCACCGTACCTGCTGGACCGCGCCC GCAGCGGCTACCGCATGGGGCACGGCAAGGTGCTCGACCACATGTTCCTTGACGGTTTGGAAGACGCCTACGACAAGGGCCGCCTGATGGGCACCTTTGC
|
|
| Amino Acid Sequence |
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MQIENKIFLVSGGASGLGAATAEMLVAAGAKVMLVDLNADAVAAKAQQLGENARSAVADISQETAAEAAVQATVAAFGGLHGLVNCAGVVRGEKILGKDG PHGLASFAQVINVNLIGSFNLLRLAAAAIAETEANADGERGVIINTASVAAFDGQIGQAAYAASKGAIASLTLPAARELARFGIRVMTIAPGIFETPMMA GMTEQVRESLAAGVPFPPRLGKPAEYAALVRHIIENSMLNGEVIRLDGALRMAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|