Pseudomonas simiae MEB105, RU03_RS03240
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas simiae strain MEB105 contig_4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCACTGGTCAGTTCGCCGTTGGCTTGCAAGGTGCTGAGCAACTGGCTCTGCGGGAACTGGCGCATTTTCAGCGCGTATTCGATGACCGGGCCGTCACC GCCCAATTGCGGGGCTTCGGCACTGCCGGTAATCGGCAACACTTCAAGATACAAATCTTCGGTCAGGCGCTGGTTGAGGCGCAGTTCTTCGTTGCAGAAG TGCCCGCGCTTTTCCAGATCGGTGAAATCCAGAAACCCGAAGTTCATCGGCTTCTTCAGCTTATAGGCATACGGGCCGGTCAGGACGACCCAGGAAATAT GGGTTTCGATGACTTGAAACGCTTCAACCGGGTGAGGGTATAAAGCCGGGTTTTGCAGGGCAGCGATCAGGGACTGGCTCACGGGCGATCCTTCAGAGTC TGGGGAAAAACATGGCGGGCATTATGGCCGCTACGAGCGGTCGTGCAAACCGCTGTCCGGCTCATGTTGATCATCGATAAAGTGCGTATAATCCGCCGCC
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| DNA Sequence for Gene |
>RU03_RS03240
ATGACTCGAACTCGATCCCCCCGTTCCCGTAAAAAACCTCCTTCCCGCGGCCTGCGTCCTTGGCTGGGCTGGGCGCTCAAGCTCGGCCTGGTAGGCCTGG TGGTACTCGCTGGCTTTGCGGTGTACCTCGACGCTGTGGTGCAGGAGAAATTCTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTGTACGCTCGCCCGCT GGAGTTGTTCACCGGCCAGAAGCTGAGCAAGGATGATTTTCTCACTGAACTCGACGCCTTGGGCTACCGCCGCGAACCCGTGAGTAACGGTCCCGGTGCC GCCGCCGTCAGTGGTAACACCGTCGACCTGAACACCCGTGGCTTCCAGTTCTACGAAGGCCTGGAAAAAGCACAGCCTGTGCGCGTGCGTTTCTCCGGCG ATTACGTCGCCGAACTGTCGTCGCTCAACGGCTCCAAGTTGCCTGTGGTTCGCCTGGAACCGCTGATGATTGGCGGCATTTACCCAAAAAACCTGGAAGA TCGCATCCTGATCAAACTTGATCAGGTGCCACCGTATCTGCTGGAAACGCTGGTCGCTGTTGAAGACCGCGATTTCTACCATCACTGGGGTGTTTCGCCG AAGTCGATTGCCCGCGCGGTCTGGGTGAATACCTCCGGCGGCAAGATGACCCAGGGGGGCAGTACGCTGACGCAACAATTGGTCAAGAACTTCTACCTGA CCAACGAGCGCAGCCTGACCCGCAAGCTCACCGAAGCTATGATGGCGATGCTGCTGGAGCTGCACTACAGCAAGCAGGAAATCCTTGAGGCGTACCTCAA CGAGGTATTCGTCGGTCAGGATGGCCAGCGAGCGGTACATGGTTTCGGCTTGGCCAGCCAGTTCTTCTTTGGTCAGCCGCTGTCCGAACTGAAGCTGCAC CAGGTCGCACTGTTGGTGGGCATGGTCAAGGGACCTTCCTACTACAATCCGCGCCGCAATCCTGAGCGTGCGCTGGAGCGCCGTAACCTGGTGCTCGATG TGCTTGAGCAGCAAGGCGTCGCCACGGCTGAACAAGTCGCCGCAGCCAAGAAAATGCCACTTGGTGTAACAACCCGCGGCAAGCTGGCAGACAGCTCCTT CCCGGGCTTTATCGACCTGGTCAAACGCCAGTTGCGTGAAGACTACCGCGACGAAGACTTGACTGAAGAAGGCCTGCGGATTTTCACCAGTTTTGACCCG ATCCTGCAGATGAAGGCCGAAGCGTCGGTCAACGACACCTTTAAACGTCTGACAGGCCGTAAAGGTTCGGACGAAGTCGAAGCGGCCATGGTGGTGACCA ACCCGGAAACCGGTGAAGTGCAGGCGATGATCGGCAGTCGCCAAGCCAGCTTTGCCGGCTTCAACCGCGCGCTGGATGCGGTGCGGCCGATCGGTTCGCT GGTCAAGCCAGCCGTTTACCTGACCGCCCTGGAAAAACCGAGCAAGTACACGCTGACCAGTTGGTTGTCGGATGACCCGCTGTCGGTCAAAGGTGGCGAT GGGCAGGTGTGGACGCCGCAGAACTTCGATCGGCGTTCTCACGGCACAGTGTTCCTGTATCAGGGTATTGCCCACTCCTACAACATTTCCACGTCGCGAC TCGGCCTTGAAGTCGGTGTACCGAATGTCCTCAAGACCATTGCGCGGCTGGGCGTCACTCGTGAGTTCCCGGCGTTCCCATCGATTCTGCTGGGCGCTGG CGCGATGACCCCCATGGAAGTCGCGACCATGTACCAGACTCTCGCCAACGGTGGCTTCAATACGCCGATGCGCGGGATTCGCAGCGTGTTGACCGCCGAG GGCGAGCCGCTCAAGCGCTACCCGTTCCAGATTCAGCAGCGTTTCGACGCAGGCTCCATCTACCTGATCCAGAACGCCATGCAGCGCGTTATGCGTGAAG GTACCGGGCGCTCGGTCTACAGCGTGCTGCCGGCGAACCTGACATTGGCAGGCAAGACCGGTACCAGTAACGATTCGCGTGACAGCTGGTTCGCTGGTTT CGGCCAGGATGTGCTGGCAGTGGTGTGGCTGGGGCGCGACGATAACGGCAAGACGCCATTCACCGGTGCTACCGGTGCGCTGCAGGTCTGGACCAGCTTC ATGCGCAAAGCCGACCCGCTGCCGTTGAACATGCCGCAGCCGGACAACATCGTGCAGGCCTGGATTGATCCGCACACGGGCCAGGGCTCCGATGCCAACT GTCCGGGCGCGGTGCAGATGCCGTATATTCGCGGCAGCGAACCGCCACCCGGCGCCGCATGCGGTGGCAGTGCCCCCGCTGACGCGGAATCGGTGATGGA TTGGGTCAAGGGCTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAGAGGGTTTCAAGTGAACAAGTGGTTGTTTCCAGCTATTACAGCTCTGGCTTTGCTCAGCGGTTGCTCCAGCGTGCAGCGCGGTTCCATTCCCGTG GTGGACTCGAGTACAGCCGTCTCCAATAACGACCGGATCTCGGCTAATGGCGGTTTCCGCCAGACCGTAACCAATCGTCCTGCCCAGGCCAAGCCACAAG CCATGCCGCAGGATTCGGGCGTGGTGGTAATGGTGCCAGGCAGTGGGGCTGCGACATCAGCTCCGATCAGCGCCGAGCCGTGGACTCCTGGGCCAAGCAA CTCCGGCCCGATCGATACCGCGCCGATCCAGACCGCTCCGATCAACCAGGGCACCTACAACATGCCATCGACGCCGAGTGGCATTCCATCGTCGTCCAGC AGCGGCGGCCTTTCGGCTGACGAGCAACTGGATGGCCCGGTGCTGGCTTTGTTGACCACTGCCCAGCAACAGCAGGCGGGCGGTGATTTGAACGGCGCCT
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| Amino Acid Sequence |
>penicillin-binding protein 1B
MTRTRSPRSRKKPPSRGLRPWLGWALKLGLVGLVVLAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFTGQKLSKDDFLTELDALGYRREPVSNGPGA AAVSGNTVDLNTRGFQFYEGLEKAQPVRVRFSGDYVAELSSLNGSKLPVVRLEPLMIGGIYPKNLEDRILIKLDQVPPYLLETLVAVEDRDFYHHWGVSP KSIARAVWVNTSGGKMTQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAMLLELHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQFFFGQPLSELKLH QVALLVGMVKGPSYYNPRRNPERALERRNLVLDVLEQQGVATAEQVAAAKKMPLGVTTRGKLADSSFPGFIDLVKRQLREDYRDEDLTEEGLRIFTSFDP ILQMKAEASVNDTFKRLTGRKGSDEVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLVKPAVYLTALEKPSKYTLTSWLSDDPLSVKGGD GQVWTPQNFDRRSHGTVFLYQGIAHSYNISTSRLGLEVGVPNVLKTIARLGVTREFPAFPSILLGAGAMTPMEVATMYQTLANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQRFDAGSIYLIQNAMQRVMREGTGRSVYSVLPANLTLAGKTGTSNDSRDSWFAGFGQDVLAVVWLGRDDNGKTPFTGATGALQVWTSF MRKADPLPLNMPQPDNIVQAWIDPHTGQGSDANCPGAVQMPYIRGSEPPPGAACGGSAPADAESVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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